Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0612
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    26   9.1  

>Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical
          protein T22H6.1 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 27 KENQKNRFKIFSNYMKK 77
          K N++N FK+FSNY+ +
Sbjct: 43 KYNEENHFKVFSNYLNR 59


>U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical
           protein F56D1.1 protein.
          Length = 468

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 210 LTNDDSEQQQKPVEEHRRSGH 272
           +++DD EQQQK +E+H +  H
Sbjct: 215 VSDDDPEQQQKDLEDHVQRIH 235


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 105 KLFLLSVRMHRSHXSKNQIXNMRPMILEDKTAFTSLTNDDSEQQQKPVEEHRRSGHR 275
           KL  +  R  +    + ++  +   + +++ A +S   D  + Q+KP E+ RRS  R
Sbjct: 221 KLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPREDRRRSVER 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,664,775
Number of Sequences: 27780
Number of extensions: 121618
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)