Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0612
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27850.1 68417.m03999 proline-rich family protein contains pr...    27   6.4  
At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative / serin...    27   6.4  
At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative / serin...    27   6.4  
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl...    26   8.5  

>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 313 WCMRXLRRHXEAPRCPLLRCSSTGFCCCSESSLVKEVKAVLSSRIIGLML 164
           +C+R   R    PRC +LRC    F   ++    K    + +S +  + L
Sbjct: 472 YCVRRSYRVHHKPRCRILRCRFRSFNSITDKGHYKAAVVLAASLVCVISL 521


>At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 514

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 259 GGVGTVELRGACXEXSCTTTGFR*NYRPSLGHRTGLKXGSXSLQAT 396
           G  G +     C +      G R  YRPS   +TG K G  +L AT
Sbjct: 419 GRFGEISSASNCTDYQSRRLGIR--YRPSEPPQTGPKKGKANLPAT 462


>At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 512

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 259 GGVGTVELRGACXEXSCTTTGFR*NYRPSLGHRTGLKXGSXSLQAT 396
           G  G +     C +      G R  YRPS   +TG K G  +L AT
Sbjct: 417 GRFGEISSASNCTDYQSRRLGIR--YRPSEPPQTGPKKGKANLPAT 460


>At2g32290.1 68415.m03947 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase GI:13560977 from [Castanea crenata]
          Length = 577

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 229 SESSLVKEVKAVLSSRIIGLMLXIWF 152
           +E SL K++K +  S++ G+M+ +W+
Sbjct: 97  NEESLKKQLKKLKQSQVDGVMVDVWW 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,168,271
Number of Sequences: 28952
Number of extensions: 109694
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)