Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0611
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.3  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   4.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 283 QENISLQYFYHDL-FEI*FVYGIKLIIICTV 372
           ++N+ +   Y D  + I F Y I LI++CTV
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 169 HLHQVKLHKRDNKHTFQRVWXDAQ 98
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 102 NKHNYNKLYYNINYIEQIPIPVPV 125


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 335 NKHNYNKLYYNINYIEQIPIPVPV 358


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 542 NLHNY*RLMRIYNYTRRVTYIVPI 471
           N HNY +L    NY  ++   VP+
Sbjct: 335 NKHNYNKLYYNINYIEQIPIPVPV 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,070
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)