Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0610
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    43   1e-04
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    43   1e-04
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   2.5  

>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +3

Query: 369 GRNWIHAPDSLVXGHVAYLVKFLGXTQVDQPK 464
           GR WIH PD L+ GHV Y+ +FLG   V+ PK
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGC--VETPK 73


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +3

Query: 369 GRNWIHAPDSLVXGHVAYLVKFLGXTQVDQPK 464
           GR WIH PD L+ GHV Y+ +FLG   V+ PK
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGC--VETPK 73


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
          protein F19C7.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 12 HHH*NNINNSWPSLVQ 59
          +HH  NI N WPSLVQ
Sbjct: 15 NHHEYNIKNPWPSLVQ 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,702,375
Number of Sequences: 27780
Number of extensions: 101490
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)