Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0608
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    48   1e-06
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    29   0.49 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.5  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.6  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.6  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   8.0  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 34/52 (65%)
 Frame = +3

Query: 345 TELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITI 500
           ++L   N+ LF++L+   + + +PI+YTPT G A ++F  +YR P G Y+ I
Sbjct: 77  SQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDI 128



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 IICPNMLRGIDHIKDPRLNKGLAFTLEE 223
           I CP  L+G+  +  PR NK  AFT EE
Sbjct: 9   IECP--LKGVTLLNSPRYNKDTAFTPEE 34


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
 Frame = +2

Query: 20  FFKSFLTFIFERTKFKRNIINGLQPKYLDQRRNMHEITGNIICPNMLRGIDHIK------ 181
           FF S  TF+F+  +F  N+I+ L+ + LD + + +E+  ++   +    I  +K      
Sbjct: 530 FFHS--TFLFQNYEFSDNVISLLKSRRLD-KSDRNELAEDLNSDDRYNFISRLKKFIFME 586

Query: 182 ------DPRLNKGLAFTLEEXKL*VFTDFWPQI*NPGRTVGVL 292
                    L+K + FTL+   +  F D +P +    + +G L
Sbjct: 587 KEKNGLSRSLSKSITFTLDSASVSEFEDVYPDLQFQCQVIGAL 629


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 44   IFERTKFKRNIINGLQPKYLDQRRNMHEI 130
            +F  T     +INGLQPK++ + RN+ E+
Sbjct: 1256 VFMATVLAVPLINGLQPKFI-ELRNVFEV 1283


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 457 NFWHANPTVGVYTIGM 410
           ++WH +P +G+ T+GM
Sbjct: 327 SYWHESPNMGLGTVGM 342


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 457 NFWHANPTVGVYTIGM 410
           ++WH +P +G+ T+GM
Sbjct: 327 SYWHESPNMGLGTVGM 342


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 334 YLFKSSSYLSNEIWQNSNCSSWVLNLGPKVR 242
           + F+  S++ N    NSN  SW+L    +VR
Sbjct: 305 FSFEHLSFIWNYFDANSNAFSWLLRFDSQVR 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,166
Number of Sequences: 5004
Number of extensions: 42831
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)