Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0608
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 83 1e-16
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 80 1e-15
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 79 2e-15
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117... 77 8e-15
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 75 4e-14
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 67 1e-11
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 62 4e-10
08_01_0637 + 5537421-5539547 28 6.2
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 83.4 bits (197), Expect = 1e-16
Identities = 34/57 (59%), Positives = 48/57 (84%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKXXI 518
+LQ+RNE+LF+ LL ++E+ +P+VYTPTVG ACQK+G +YRRP+GLYI++ DK I
Sbjct: 93 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKI 149
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 487 YISLFMIRXXFDILKNWPEHAVRAIVFTDG 576
YISL ++LKNWPE +++ IV TDG
Sbjct: 140 YISLKDKGKILEVLKNWPERSIQVIVVTDG 169
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 80.2 bits (189), Expect = 1e-15
Identities = 32/57 (56%), Positives = 48/57 (84%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKXXI 518
+LQ+RNE+LF+ LL ++E+ +P+VYTPTVG ACQK+G ++RRP+GLYI++ +K I
Sbjct: 96 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGRI 152
Score = 33.9 bits (74), Expect = 0.094
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 487 YISLFMIRXXFDILKNWPEHAVRAIVFTDG 576
YISL ++L+NWPE +++ IV TDG
Sbjct: 143 YISLKEKGRILELLRNWPEKSIQVIVVTDG 172
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 83 GLQPKYLDQRRNMHE-ITGNIICPNMLRGIDHIKDPRLNKGLAFTLEE 223
G++ Y + R + IT +C + G ++DPR NKGL+FT +E
Sbjct: 8 GVEDAYGEDRATEDQPITPWAVC--VASGHSLLRDPRHNKGLSFTEKE 53
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 79.4 bits (187), Expect = 2e-15
Identities = 30/57 (52%), Positives = 48/57 (84%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKXXI 518
+LQ+RNE+LF+ LL ++E+ +P+VYTPTVG ACQK+G ++R+P+GLY+++ DK +
Sbjct: 162 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGLYVSLKDKGKV 218
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 487 YISLFMIRXXFDILKNWPEHAVRAIVFTDG 576
Y+SL D+L+NWPE ++ IV TDG
Sbjct: 209 YVSLKDKGKVLDVLRNWPERNIQVIVVTDG 238
>02_05_0228 -
27010982-27011272,27011401-27011506,27011616-27011767,
27011919-27011930
Length = 186
Score = 77.4 bits (182), Expect = 8e-15
Identities = 32/57 (56%), Positives = 46/57 (80%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKXXI 518
E +R+E+LF+ LL ++E+ +P+VYTPTVG ACQK+G +YRRP+GLYI++ DK I
Sbjct: 2 EKGERSERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKI 58
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 487 YISLFMIRXXFDILKNWPEHAVRAIVFTDG 576
YISL ++LKNWPE +++ IV TDG
Sbjct: 49 YISLKDKGKILEVLKNWPERSIQVIVITDG 78
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 74.9 bits (176), Expect = 4e-14
Identities = 30/57 (52%), Positives = 46/57 (80%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKXXI 518
+LQ+ NE+LF+ LL ++E+ +P+VYTPTVG ACQK+G ++ RP+GLYI++ +K I
Sbjct: 116 DLQEGNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFSRPQGLYISLKEKGKI 172
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 487 YISLFMIRXXFDILKNWPEHAVRAIVFTDG 576
YISL ++LKNWPE +++ IV TDG
Sbjct: 163 YISLKEKGKILEVLKNWPERSIQVIVVTDG 192
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +3
Query: 351 LQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDK 509
L DRNE L++ +L +I+ F PI+YTPTVGL C+ + ++RRPRG+Y + DK
Sbjct: 119 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDK 171
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Frame = +3
Query: 351 LQDRNEKLFFS---LLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDK 509
L DRNE +++ L+D +IE+ PIVYTPTVGL CQ + ++RRPRG+Y + D+
Sbjct: 154 LHDRNETMYYKAEVLID-NIEEHAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDR 208
>08_01_0637 + 5537421-5539547
Length = 708
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 325 KSSSYLSNEIWQNSNCSSWVLNLGPKVREYLKLXLFEREG 206
K + ++ E W N+ SW + + ++E L + EREG
Sbjct: 395 KMARWMGVEDWWNTKAYSWPIPVSECIQELLVNQVLEREG 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,097
Number of Sequences: 37544
Number of extensions: 244231
Number of successful extensions: 492
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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