Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0608
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   2.7  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 36/56 (64%), Positives = 46/56 (82%)
 Frame = +3

Query: 351 LQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDKXXI 518
           L +RNE LFF +L    E+ MPIVYTPTVGLAC+K+G+++RRPRGL+I+IHDK  I
Sbjct: 125 LLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDKGHI 180



 Score = 35.9 bits (79), Expect = 0.024
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +2

Query: 158 LRGIDHIKDPRLNKGLAFTLEEXKL 232
           +RG D ++D  LNKGLAFTLEE ++
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQI 84



 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 520 DILKNWPEHAVRAIVFTDG 576
           DI+ NWP   V+AIV TDG
Sbjct: 182 DIVSNWPTTEVKAIVMTDG 200


>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 390 DCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYI 494
           +CD + F+ + + PTV +   K  ++   P G+Y+
Sbjct: 227 ECDADTFVTVTFRPTVPIVPDKHSVLDHVPVGIYV 261


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 116 NMHEITGNIICPNML----RGIDHIKDPRLNKGLAFTLEEXK 229
           N H   G ++ P  +      +DH+KDP+    LA TL E K
Sbjct: 373 NGHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHK 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,680
Number of Sequences: 59808
Number of extensions: 289657
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)