Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0608
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    83   1e-16
Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81500-2|CAB04096.1|  394|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 39/84 (46%), Positives = 51/84 (60%)
 Frame = +3

Query: 255 PKFKTQEEQLEFCQISFXXXXXXXXXXXXXTELQDRNEKLFFSLLDCDIEKFMPIVYTPT 434
           P F T+E+Q                       LQDRNEKL++ +L  ++++ MPIVYTPT
Sbjct: 82  PAFMTEEQQAYRIITKLRQQPDNLAKYIQLDSLQDRNEKLYYRVLCDNVKELMPIVYTPT 141

Query: 435 VGLACQKFGLVYRRPRGLYITIHD 506
           VG ACQ FG +YR P+GLYITI+D
Sbjct: 142 VGQACQHFGFIYRNPKGLYITIND 165



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 161 RGIDHIKDPRLNKGLAFTLEE 223
           RGID +K P LNKG+AF+L E
Sbjct: 50  RGIDLLKSPGLNKGMAFSLHE 70



 Score = 30.7 bits (66), Expect = 0.78
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +1

Query: 523 ILKNWPEHAVRAIVFTDG 576
           IL NWP   VRAIV TDG
Sbjct: 174 ILANWPTENVRAIVITDG 191


>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 195 LSRGSFIWSMPLSMFGQIMLPVISCIFLLWSKYLG-CKPFIILRLN 61
           LS    +W  PL+  G + + V   I +   +YLG C PF+I R++
Sbjct: 94  LSVQLIVWFYPLAQIG-LTMSVYVTILVSVHRYLGVCHPFLIRRIS 138


>Z81500-2|CAB04096.1|  394|Caenorhabditis elegans Hypothetical
           protein F11D11.3 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 396 HNQVN*KIVFHSYLATQSNKGIYSNRRHIY 307
           HN++N +  FH YL+ QS+   YS  R I+
Sbjct: 33  HNEINVEAPFHMYLSAQSDS--YSILRQIF 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,471
Number of Sequences: 27780
Number of extensions: 229427
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)