Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0607
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.76 
SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)                  26   4.1  
SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)         26   5.4  
SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   5.4  
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    25   7.1  
SB_8315| Best HMM Match : Ras (HMM E-Value=0)                          25   9.4  

>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 277 LHLFFIYTNITIALNTDGCHRRHPRRYVSEFNISSC 170
           L L FIY ++   ++   C+ +HP +  +E  + SC
Sbjct: 831 LELKFIYRHLKFKVHQFSCNEKHPVKQCNESLVKSC 866


>SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)
          Length = 341

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 155 PFTRAARRYVKFGNISTRVSSMTTIS 232
           PF+ AA +Y+ +  I+  V SM TIS
Sbjct: 90  PFSYAACQYMGYSGIAIAVGSMQTIS 115


>SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)
          Length = 242

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = -3

Query: 220 HRRHPRRYVSEFNISSCSTCKW--*CTESRGRSMGRSKNRRVLHTYSYRDRS 71
           H R PR Y     ISS   C W   C     RS   S +     T S R RS
Sbjct: 5   HARDPRCYNGRVPISSPYRCDWPNGCVTEVHRSRCHSAHHHADWTCSLRGRS 56


>SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 660

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 259 YTNITIALNTDGCHRRHPRRYVSEFNIS 176
           YT+  +A+ T G HR     +V+E+++S
Sbjct: 321 YTHHVVAIVTQGQHRTGHESWVTEYSVS 348


>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 127 MGRSKNRRVLHTYSYR---DRSKG*YLKVSKFSLQR 29
           MG+ KNR V    SYR    +SK   +KV K ++ R
Sbjct: 1   MGKGKNRSVYRHSSYRTLPTKSKSLRMKVGKSNIPR 36


>SB_8315| Best HMM Match : Ras (HMM E-Value=0)
          Length = 565

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 277 LHLFFIYTNITIALNTDGCH-----RRHPRRYVSEFNISSCST 164
           LH   + TN+T A  +D C+     R+   R V + N++S  T
Sbjct: 317 LHRLVLQTNVTSACTSDKCYIGSYFRQMLHRLVLQTNVTSART 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,421,645
Number of Sequences: 59808
Number of extensions: 78147
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)