Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0606
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 43 1e-04
07_01_1036 + 9021395-9021658,9024214-9024690 40 0.001
08_02_1251 - 25592537-25593380,25593589-25593893 33 0.13
06_01_1008 - 7853089-7854147 33 0.17
08_02_1310 - 26037025-26038074 32 0.22
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 32 0.22
08_02_1304 - 26008105-26009070 31 0.39
08_01_0797 + 7711772-7712869 31 0.51
08_01_0801 - 7750548-7751708 31 0.68
10_08_0082 + 14713989-14714046,14714109-14714953 30 1.2
08_01_0027 - 195321-195932,197206-197415 30 1.2
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886 29 2.7
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 3.6
10_08_0059 + 14529885-14530991 27 6.3
08_01_0199 + 1628158-1629192 27 8.4
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 421
HKL+LS+ S F +MF M + VF +DV A L+QFMY GE+ V EE+
Sbjct: 366 HKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 421
+ H+++L+ SP F+ M M ++ I+ + DVS+ LR + +MY E + ++
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMA 140
Query: 422 ASFISTAEQLPVK 460
+ + AE+ VK
Sbjct: 141 SDLLVLAEKYEVK 153
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFXMNPTQHPI--VFLKDVSHSALRDLLQFMYQGE 397
H+ +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 238 HRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>06_01_1008 - 7853089-7854147
Length = 352
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQG 394
HK++L+ SP F F M + V +KD+ S + +L F+Y G
Sbjct: 191 HKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKAMLHFIYTG 238
>08_02_1310 - 26037025-26038074
Length = 349
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASF 430
H+ VL+ SP F+ M P V L+D+ +A R +L F+Y + +ELA F
Sbjct: 193 HRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIYTDALPDDIDELAGF 252
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMF-XMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 406
A HK+VL++ SP F+ E+F M ++ +KD+ + LL F+Y +++
Sbjct: 131 AAHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQPDVFKALLHFIYTDSLSI 184
>08_02_1304 - 26008105-26009070
Length = 321
Score = 31.5 bits (68), Expect = 0.39
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 257 HKLVLSVCSPYFQE--MFXMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASF 430
H+ VL+ SP F+ + M P V L+D+ + R LL F+Y +V Q E +S
Sbjct: 168 HRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVY---TDVLQIEGSSS 224
Query: 431 ISTAEQL 451
ST + L
Sbjct: 225 TSTTDLL 231
>08_01_0797 + 7711772-7712869
Length = 365
Score = 31.1 bits (67), Expect = 0.51
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQEMFXMNPTQHPI--VFLKDVSHSALRDLLQFMY 388
A HKLVL+ SP F+ F + + +KD+ S R LL F+Y
Sbjct: 204 AAHKLVLAARSPVFKAEFYGEMIERGTFSIDIKDMQPSVFRALLHFIY 251
>08_01_0801 - 7750548-7751708
Length = 386
Score = 30.7 bits (66), Expect = 0.68
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMFXM--NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 406
+ HKLVL++ SP F+ E+ + P PI + D+ + R LLQF+Y + V
Sbjct: 213 SVHKLVLAMRSPVFKAELCGLLREPGTQPITIV-DMQPAVFRALLQFIYTDQFPV 266
>10_08_0082 + 14713989-14714046,14714109-14714953
Length = 300
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQ-EMFXM---NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQE 415
+A H+ VL+ SP F+ E++ + T V ++D+ + LL+FMY + +E
Sbjct: 141 LAAHRCVLAARSPVFKAELYGLMKEGGTAAGAVHIEDIEPRVFKVLLRFMYTDSLPEMEE 200
Query: 416 E 418
E
Sbjct: 201 E 201
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMF--XMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQ 412
+ HK +L+ CSP F+ MF + + + + D+ + L+ F+Y G + + Q
Sbjct: 119 LKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY-GTIKLDQ 174
>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
Length = 334
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQ-EMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 418
A H+ VL+ SP F E+F + + +V + D+ + LL+FMY + +EE
Sbjct: 173 AAHRCVLAAQSPVFSAELFGPMKDSDRAGVVRIDDMEAQVFKALLRFMYTDSLPEMEEE 231
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 278 CSPYFQEMFXMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN-VKQEEL 421
C P + F T++P+VFL+ + + DLLQ + V+ K+ EL
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVHRTKRLEL 301
>10_08_0059 + 14529885-14530991
Length = 368
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQ-EMFXMNPTQH---PIVFLKDVSHSALRDLLQFMY 388
+A H++VL+ SP F+ E+ P + ++ + D+ R LL +MY
Sbjct: 212 VAAHRVVLAARSPVFKAELLAGVPAKDGGGAVIQIDDMDAEVFRSLLHYMY 262
>08_01_0199 + 1628158-1629192
Length = 344
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 ATHKLVLSVCSPYFQEMFXMNPTQH--PIVFLKDVSHSALRDLLQFMY 388
A H++VL++ SP F + +H P + + D+ LL+F+Y
Sbjct: 211 AAHRIVLAMRSPVFMASLYGSMREHRAPRIAVDDMEPEVFDALLRFVY 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,593,217
Number of Sequences: 37544
Number of extensions: 212912
Number of successful extensions: 470
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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