Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0606
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 44 8e-05
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 44 8e-05
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 39 0.002
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 39 0.002
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 36 0.020
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 33 0.081
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 31 0.43
At4g04090.1 68417.m00578 speckle-type POZ protein-related contai... 28 4.0
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = +2
Query: 254 THKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 409
+HK++LS+ S F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 366 SHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
Score = 31.5 bits (68), Expect = 0.33
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFXMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELA 424
+ HK++L F + + ++ L+ VS+ L LLQ++Y G + + ELA
Sbjct: 224 VPAHKVILQASGN-----FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELA 277
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = +2
Query: 254 THKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 409
+HK++LS+ S F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 366 SHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
Score = 31.5 bits (68), Expect = 0.33
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFXMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELA 424
+ HK++L F + + ++ L+ VS+ L LLQ++Y G + + ELA
Sbjct: 224 VPAHKVILQASGN-----FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELA 277
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFXMNPTQ---HPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 418
I THK VL+ S F+ M + + + L D+SH L+ LL+F+Y G + +
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96
Query: 419 LASFISTAEQLPV 457
S A++ +
Sbjct: 97 YRSLYLAADKYDI 109
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFXMNPTQ---HPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 418
I THK VL+ S F+ M + + + L D+SH L+ LL+F+Y G + +
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96
Query: 419 LASFISTAEQLPV 457
S A++ +
Sbjct: 97 YRSLYLAADKYDI 109
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 35.5 bits (78), Expect = 0.020
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 421
I HK VL SP F+ M M + + + DVS+ ALR + ++Y E + ++
Sbjct: 80 IPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAEACLDEQMA 139
Query: 422 ASFISTAEQLPVK 460
+ +E+ VK
Sbjct: 140 CDLLVMSEKYQVK 152
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 33.5 bits (73), Expect = 0.081
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFXMN-PTQHPIVFLKDVSHSALRDLLQFMYQ 391
HKLVL+ SP+F+ F + V + D+ + LLQFMY+
Sbjct: 212 HKLVLAARSPFFKSKFFSEFEANNTEVTINDLEPKVFKALLQFMYK 257
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 31.1 bits (67), Expect = 0.43
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 HKLVLSVCSPYFQEMFXMNPTQ-HPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 427
HKLVL+ S +F+ MF + + V + D+ + LL FMY+ + E L +
Sbjct: 219 HKLVLAARSQFFRSMFYNTLAENNSDVVISDLEPKVFKALLHFMYKDSLPGDVEPLTA 276
>At4g04090.1 68417.m00578 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 192
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 248 IATHKLVLSVCSPYFQEMFXMN----PTQHPIVFLKDVSHSALRDLLQFMY 388
I+ HK +LS S F+EMF + ++ + L ++ H L + F Y
Sbjct: 38 ISAHKRILSARSEVFEEMFESDKYKASSKLETITLSEMKHEVLEAFVDFTY 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,609
Number of Sequences: 28952
Number of extensions: 180345
Number of successful extensions: 328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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