Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0604
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    26   0.18 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   6.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.1  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 281 GRSGGGAPSPQSARVSSNGAGGMAVSRVPSPLHDGNTPVAENWCFTQV 424
           G +  G P   S      GA  +  SR P P HDG   + E +   +V
Sbjct: 188 GNNNNGTPGGHSGFWGQLGAA-VDESRTPRPKHDGRGRIVERFTSDRV 234


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 183 KIGLYERIMALARYN 227
           K+GLYERI  L + N
Sbjct: 144 KVGLYERIQKLKKAN 158


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 272 ECVGRSGGGAPSPQS 316
           EC GRS G  P   S
Sbjct: 81  ECEGRSAGSIPGASS 95


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 2  SVQHVPRHFAQP 37
          SVQ +PRHF  P
Sbjct: 27 SVQPLPRHFNPP 38


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 393  GVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPP 292
            G   S  G+  + TA+PP          G  +PP
Sbjct: 1096 GSSSSSEGVPLKGTAVPPPSGSSGPGSTGSKSPP 1129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,787
Number of Sequences: 336
Number of extensions: 2102
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)