Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0604
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)                   79   3e-15
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            30   1.0  
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)                   29   3.2  
SB_49108| Best HMM Match : Bcl-2 (HMM E-Value=1.1e-28)                 28   5.6  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)                   28   5.6  
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          27   9.7  
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)
          Length = 398

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 31/36 (86%), Positives = 35/36 (97%)
 Frame = +2

Query: 386 NTPVAENWCFTQVKVVKFSYMWTINNFSFXREEMGE 493
           +TPVAENWC+TQ+KV+KFSYMWTINNFSF REEMGE
Sbjct: 38  STPVAENWCYTQIKVIKFSYMWTINNFSFCREEMGE 73


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 390 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDRPTHSLXEPSS 253
           VF S +G+ T + A PP+ F  +       A PP  P  S+  PSS
Sbjct: 367 VFASSSGVPTPVKAPPPSVFASSSGVPTPVAAPPPAPPPSVFAPSS 412



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 390 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDRPTHSLXEPSS 253
           VF S +G+ T +TA PPAP     A       P   P  S+  PSS
Sbjct: 443 VFASSSGVPTPVTAPPPAPPPSVFAPSSGVPTPVAAPPPSVFAPSS 488



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 390 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDRPTHSLXEPSS 253
           VF S +G+ T + A PPAP     A       P   P  S+  PSS
Sbjct: 385 VFASSSGVPTPVAAPPPAPPPSVFAPSSGVPTPVAAPPPSVFAPSS 430



 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 390 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDRPTHSLXEPSS 253
           VF   +G+ T + A PP+ F  +         PP  P  S+  PSS
Sbjct: 425 VFAPSSGVPTPVAAPPPSVFASSSGVPTPVTAPPPAPPPSVFAPSS 470


>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
          Length = 470

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -2

Query: 360 RLTAIPPAPFEETRA--DCGEGAPPPDRPTHSLXEPSSTKRSAR 235
           RL  + P P  +     D G   P P  PTH    P ST+ S R
Sbjct: 205 RLRPVSPNPCTQDSIVKDFGMDTPHPGPPTHDYHSPHSTETSRR 248


>SB_49108| Best HMM Match : Bcl-2 (HMM E-Value=1.1e-28)
          Length = 252

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 375 NGLGTRLTAIPPAPFEETRADCGEGAPPPDRPTHS 271
           +G+ T+  A    P + ++ D G+G PPP RP+++
Sbjct: 49  HGVATKKMAPGGVP-QGSKRDEGDGPPPPQRPSYN 82


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 354 TAIPPAPFEETRADCGEGAPPPDRPTHSLXEPSSTKR 244
           T  PP   +       E  PP D PT +  EP + K+
Sbjct: 124 TTSPPTTTDSPPTTAAETLPPTDAPTEAPTEPPTEKK 160


>SB_9129| Best HMM Match : efhand (HMM E-Value=0.075)
          Length = 443

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 248 LVELGSXSECVGRSGGGAPSPQSARVSSNGAGG 346
           L + GS S    R GGG P P   R    G GG
Sbjct: 6   LTKNGSQSNSDYRPGGGPPKPPGRRFGRLGGGG 38


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = -2

Query: 324 TRADCGEGAPPPDRPTHSLXEPSSTKRSARFADYTWLRPLFVRIIQFSKMSPLLSTH 154
           T+ D G+  P P+RP  +    ++++ S       +  PLF ++ Q  +   +   H
Sbjct: 342 TKVDNGQATPRPERPARTSHSRTTSQPSQYCGKMKYDDPLFEKVRQAKENKKVFICH 398


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 335 GAGGMAVSRVPSPLHDGNTPVAENWCFTQVKVVKFSYMWTI 457
           G  G+ + RVP PL D +   A+NW   Q+     +  W +
Sbjct: 799 GLIGLFLPRVPLPLTDTDQFDADNWLAVQLMSRPITVNWMV 839


>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 335  GAGGMAVSRVPSPLHDGNTPVAENWCFTQVKVVKFSYMWTI 457
            G  G+ + RVP PL D +   A+NW   Q+     +  W +
Sbjct: 915  GLIGLFLPRVPLPLTDTDQFDADNWLAVQLMSRPITLNWMV 955


>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 423  TCVKHQFSATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDRPTH 274
            TCV +  +  G   +C  L      + P+ +E  R +   G P P  PT+
Sbjct: 1107 TCVSNSCTNGG---TCVDLPNEFKCVCPSGYEGRRCEHASGCPSPKSPTN 1153


>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 335  GAGGMAVSRVPSPLHDGNTPVAENWCFTQVKVVKFSYMWTI 457
            G  G+ + RVP PL D +   A+NW   Q+     +  W +
Sbjct: 913  GLIGLFLPRVPLPLTDTDQFDADNWLAVQLMSRPITVNWMV 953


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,886,510
Number of Sequences: 59808
Number of extensions: 283622
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)