Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0604
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical p...    83   2e-16
Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical pr...    83   2e-16
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    29   2.8  
Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.       28   3.7  
AF067219-4|AAC17028.1|   82|Caenorhabditis elegans Hypothetical ...    28   3.7  
AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin co...    28   3.7  
AC006626-1|AAF39788.1|  171|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    27   6.5  
U13072-5|AAK31400.1|  390|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U13072-4|AAL00851.1|  397|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical
           protein T16H12.5b protein.
          Length = 409

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 39/58 (67%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
 Frame = +2

Query: 326 SSNGAGGMAVSRVPSPLHDGNT--PVAENWCFTQVKVVKFSYMWTINNFSFXREEMGE 493
           S N A G ++S  PS    G+   PVAENWC TQVKVVKF+YMWTINNFSF REEMGE
Sbjct: 15  SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGE 72


>Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical
           protein T16H12.5a protein.
          Length = 451

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 39/58 (67%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
 Frame = +2

Query: 326 SSNGAGGMAVSRVPSPLHDGNT--PVAENWCFTQVKVVKFSYMWTINNFSFXREEMGE 493
           S N A G ++S  PS    G+   PVAENWC TQVKVVKF+YMWTINNFSF REEMGE
Sbjct: 57  SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGE 114


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 281 GRSGGGAPSPQSARVSSNGAGGMAVS 358
           G+SGG A +  +A V+ NGAGG++ +
Sbjct: 349 GKSGGNAVAVANANVTVNGAGGVSTT 374


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 281 GRSGGGAPSPQSARVSSNGAGGMAVS 358
           G+SGG A +  +A V+ NGAGG++ +
Sbjct: 349 GKSGGNAVAVANANVTVNGAGGVSTT 374


>Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical
           protein T05F1.11 protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 328 FERRWRDGGEPRAQPVARRKHARRRK 405
           +ERRWR   E R + + R+K   R+K
Sbjct: 421 YERRWRIEEEERLEEIRRKKEEERKK 446


>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = -2

Query: 435 FTTLTCVKHQFSATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDRPTHSLXEPS 256
           FT++      F          G G      PPA        CG GAPPP  P ++   PS
Sbjct: 7   FTSMIAASSAFLFPSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPP--PAYAAPAPS 64


>Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical
           protein ZK858.4 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 416 TQVKVVKFSYMWTINNFSFXREE 484
           T++KV K  + WT+ NFS   +E
Sbjct: 35  TEIKVEKVQHTWTVKNFSHCYQE 57


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 315  DCGEGAPPPDRPTHSLXEPSSTKRSARFA 229
            D G   PPP  P+H   +PS+T R +  A
Sbjct: 2343 DIGINPPPPPPPSHVHTKPSATARMSSIA 2371


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 315  DCGEGAPPPDRPTHSLXEPSSTKRSARFA 229
            D G   PPP  P+H   +PS+T R +  A
Sbjct: 2343 DIGINPPPPPPPSHVHTKPSATARMSSIA 2371


>U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 416 TQVKVVKFSYMWTINNFSFXREE 484
           T++KV K  + WT+ NFS   +E
Sbjct: 35  TEIKVEKVQHTWTVKNFSHCYQE 57


>AF067219-4|AAC17028.1|   82|Caenorhabditis elegans Hypothetical
           protein R12E2.7 protein.
          Length = 82

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 239 ALLLVELGSXSECVGRSGGGAPSPQSARVSSNGAGG 346
           A +   + S + C+G SGGG   PQ+     N  GG
Sbjct: 8   AFVAALVASGNACLGGSGGGGCCPQAQPSCGNPCGG 43


>AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein13 protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 350 AVSRVPSPLHDGNTPVAENWCFTQVKVVKFSYMWTIN 460
           A+   P+P     T VAE W   + + +K +  WT+N
Sbjct: 111 ALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMN 147


>AC006626-1|AAF39788.1|  171|Caenorhabditis elegans Hypothetical
           protein CC8.1 protein.
          Length = 171

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 302 PSPQSARVSSNGAGGMAVSRVPSPLHDGNTPVA-ENWCFTQVKVVKFSYMWTINNFSFXR 478
           PSP +   +SN  GG AV R    + +G TPVA  N        +  S+   ++ ++  R
Sbjct: 69  PSPSATSSASN--GGPAVKRSRVSITEGMTPVASRNAAAAAAASLGLSFFPGLSQWATTR 126

Query: 479 EE 484
           EE
Sbjct: 127 EE 128


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 351 AIP-PAPFEETRADCGEGAPPPDRPTHSLXEPSSTKRSARFAD 226
           A+P PAP      DCG  AP P  P  +  +     +   + D
Sbjct: 185 AVPAPAPAAAPAPDCGSAAPAPAAPAPAATDSGYRSKRNSYGD 227


>U13072-5|AAK31400.1|  390|Caenorhabditis elegans Hypothetical
           protein C07D10.2a protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 398 AENWCFTQVKVVKFSYMWTINNFS 469
           A++W  ++V+ +   +MWTI  FS
Sbjct: 12  ADSWSTSEVRSLVHKHMWTIRGFS 35


>U13072-4|AAL00851.1|  397|Caenorhabditis elegans Hypothetical
           protein C07D10.2b protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 398 AENWCFTQVKVVKFSYMWTINNFS 469
           A++W  ++V+ +   +MWTI  FS
Sbjct: 12  ADSWSTSEVRSLVHKHMWTIRGFS 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,988,082
Number of Sequences: 27780
Number of extensions: 214627
Number of successful extensions: 795
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)