Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0602
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.29 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   0.90 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   2.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -3

Query: 152 CCTGKSSWRKLSRRIRCWEIMLK--CN 78
           C  G + W   +   RCWE+ +   CN
Sbjct: 518 CSLGINPWANCTASTRCWEVFMDGICN 544


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 310 HTWRSSCLLNQFLCRYTIRTIPDKRKCGNRPFGVRTTIFS 191
           H W+ +    +   RY  R++ D  + G RP   RTT+ S
Sbjct: 227 HKWKKNDSSKK-KTRYYYRSVDDVIEKGKRPGAFRTTLGS 265


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 241 CQGWYESCTGRGTGSGGKNSA 303
           C    ESC   G GS G+NSA
Sbjct: 15  CDDEVESCIAVGVGS-GRNSA 34


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 48  TLTERFVVYCNIFIE 4
           TLT  F  +CN+ +E
Sbjct: 424 TLTGPFFTFCNVLME 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,234
Number of Sequences: 336
Number of extensions: 1921
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)