Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0602
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.30 
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   2.1  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    26   2.8  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   6.5  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   6.5  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 48  WPKLKKNLINITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRT 212
           WPKL+KN+  IT  +   T   S  F P       ++ H +LDLR   +   VR+
Sbjct: 746 WPKLRKNIRKITKPNGFTTDQHSQTFIP-------SQTHTKLDLRLSDVTDSVRS 793


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +3

Query: 78  ITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRTPKGLFPH 233
           +    Y P +N     PP   +     N     LRT  L M + TP    P+
Sbjct: 441 LRLDEYPPDANRGYNLPPAIISVFDENNTKLCSLRTAALLMFIPTPDFSMPY 492


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +3

Query: 15  YYNRQQIVPLEWPKLKKNLINITFQH---YLPTS---NPSAQFPP-RTFAC 146
           Y N + ++ + WP+L++ +I  T Q+   + P+S   N  + FP  R + C
Sbjct: 77  YINSKGLIRINWPQLQQQVIGPTEQYTGFHFPSSGRFNTQSTFPTIRNWIC 127


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 149 NNQESLSS*PSYSGAKDGGSNTKRSVSTLSFVRDGTNRVPAEE 277
           ++  S S   S S ++DG SNT  + S     +  TN   +EE
Sbjct: 300 DSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEE 342


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/50 (20%), Positives = 23/50 (46%)
 Frame = +3

Query: 75  NITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRTPKGL 224
           N +F  Y  TSN      P +++  +  +++  D+     ++ +  PK +
Sbjct: 406 NASFSSYSSTSNTDKSLRPSSYSAVSESSNFTHDVSRDNKEISLNAPKSI 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,819
Number of Sequences: 5004
Number of extensions: 31867
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)