Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0602
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 29 1.6
11_06_0183 - 20999343-20999865,21000351-21000748 29 2.1
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 28 3.7
04_04_1100 + 30894575-30895012,30896082-30897044 28 3.7
02_03_0164 - 15862166-15862366,15862443-15862508,15862754-158630... 28 3.7
05_03_0274 - 11372054-11372347 28 5.0
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 28 5.0
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496... 27 6.5
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 27 6.5
05_04_0065 - 17617084-17617183,17617587-17617626,17618323-17618500 27 8.7
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 30 QIVPLEWPKLKKNLINITFQHYLPTSNPSAQ 122
Q V + W K + N IN + HYLP NP Q
Sbjct: 322 QNVSMGWFKQEPNGINFSAAHYLPRCNPFNQ 352
>11_06_0183 - 20999343-20999865,21000351-21000748
Length = 306
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 189 PEYEGQDDNDSWLLHRQKFLEETEQK 112
P+++G+DD +WL H ++F TE +
Sbjct: 94 PKFDGKDDPLNWLNHCEQFFFRTENR 119
>11_06_0667 +
26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 167 IMILGCCTGKSSWRKLSRRIRCWE 96
I + GCCT + RK+ I CW+
Sbjct: 208 IRLFGCCTERQYKRKIKLSIWCWK 231
>04_04_1100 + 30894575-30895012,30896082-30897044
Length = 466
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 262 CTGRGTGSGGKNSAMYAVTLRARQTEIL 345
C G G GSGG + + A TL+A ++L
Sbjct: 53 CYGAGEGSGGGGALLPAATLKAALAKVL 80
>02_03_0164 -
15862166-15862366,15862443-15862508,15862754-15863029,
15864869-15864989,15865091-15865368
Length = 313
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 272 EELVQEARTPPCMQSRCVLAKLR 340
+ L+ +R PP S+CVLA+LR
Sbjct: 51 QSLLSASRPPPLFTSKCVLAELR 73
>05_03_0274 - 11372054-11372347
Length = 97
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 232 TFVCQGWYESCTGRGTGSGGK 294
+F+ GW E+ T G GSGG+
Sbjct: 20 SFLGSGWDEAATNEGIGSGGR 40
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 260 DSYHP*QTKVWKQTFWCSNHH 198
+S+ QTKVWK T SNHH
Sbjct: 70 NSWDTQQTKVWKMTKLPSNHH 90
>10_02_0074 -
4965688-4966638,4966877-4966906,4968656-4968927,
4969092-4969329
Length = 496
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 228 ETDLLVFEPPSLAPEYEGQDDNDSWLLHRQKFLEETEQKD 109
E D++ F+P L +Y+G +N W + +T++KD
Sbjct: 67 EVDIMSFDPVKLIEKYKGYGEN-RWYFFTVRKPSKTKKKD 105
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 42 LEWPKLKKNLINITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRTP 215
LE +L + L+ +++ H P S F PR AC T + R+ + L L+ R P
Sbjct: 265 LEALELSRCLLLMSYIHGSPLLESSKAFSPREAACVTASSLGRVLMLDLILRNEDRLP 322
>05_04_0065 - 17617084-17617183,17617587-17617626,17618323-17618500
Length = 105
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 212 TKRSVSTLSFVRDGTNRVPAEELVQEARTPPCMQSRCVLAKLRFYLK 352
T+ V T + DG++++ A + + RT + LAKLR L+
Sbjct: 8 TRTRVGTSRGIDDGSSKLRASSMTVDTRTQLSSAASTTLAKLRAMLR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,839,504
Number of Sequences: 37544
Number of extensions: 217665
Number of successful extensions: 620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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