Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0602
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_8346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_49283| Best HMM Match : NapE (HMM E-Value=1.7) 29 1.7
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_40407| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33) 27 6.7
SB_9994| Best HMM Match : SspO (HMM E-Value=0.39) 27 6.7
SB_46946| Best HMM Match : RVT_1 (HMM E-Value=0.7) 27 6.7
SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33) 27 6.7
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36) 27 6.7
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24) 27 8.9
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_53540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 279 WFRRQELRHVCSHVACSPN 335
W RR+E VCS V C P+
Sbjct: 217 WIRREETGQVCSQVTCEPS 235
>SB_8346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 186 EYEGQDDNDSWLLHRQKFLEETEQK 112
E EG+D+N+ + RQK+++E E++
Sbjct: 63 EDEGEDENEETIYKRQKYIDEDEEE 87
>SB_49283| Best HMM Match : NapE (HMM E-Value=1.7)
Length = 363
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 186 EYEGQDDNDSWLLHRQKFLEETEQK 112
E EG+D+N+ + RQK+++E E++
Sbjct: 333 EDEGEDENEETIYKRQKYIDEDEEE 357
>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 279 SSSAGTRFVPSLTNESVETDLLVFEPPSLAPEYEGQDDNDSWLL--HRQKFLEETEQKD 109
S+SA V T ES+ ++ FE PS+APE EG+ DSW +Q E E +D
Sbjct: 671 SNSAPRVVVRPGTEESL-LEMNRFEAPSIAPEREGE---DSWCSDGEKQDVSESDESQD 725
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 51 PKLKKNLINITF-QH-YLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGLKM 200
P L++NL+ F QH Y P+ N +++F TKN +L +R + K+
Sbjct: 1146 PDLRRNLVIQLFNQHGYFPSENITSEFQQAHVEVFPTKNCLQLKIREVRQKL 1197
>SB_40407| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
Length = 290
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 GAKDGGSNTKRSVSTLSFVRDGTNRVPAEEL 280
GAKD G+N R VS L F T R +L
Sbjct: 59 GAKDTGNNNLRPVSNLQFTSKITERAVFNQL 89
>SB_9994| Best HMM Match : SspO (HMM E-Value=0.39)
Length = 254
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 GAKDGGSNTKRSVSTLSFVRDGTNRVPAEEL 280
GAKD G+N R VS L F T R +L
Sbjct: 206 GAKDTGNNNLRPVSNLQFTSKITERAVFNQL 236
>SB_46946| Best HMM Match : RVT_1 (HMM E-Value=0.7)
Length = 367
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 GAKDGGSNTKRSVSTLSFVRDGTNRVPAEEL 280
GAKD G+N R VS L F T R +L
Sbjct: 166 GAKDTGNNNLRPVSNLQFTSKITERAVFNQL 196
>SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
Length = 919
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 GAKDGGSNTKRSVSTLSFVRDGTNRVPAEEL 280
GAKD G+N R VS L F T R +L
Sbjct: 659 GAKDTGNNNLRPVSNLQFTSKITERAVFNQL 689
>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
Length = 979
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 GAKDGGSNTKRSVSTLSFVRDGTNRVPAEEL 280
GAKD G+N R VS L F T R +L
Sbjct: 522 GAKDTGNNNLRPVSNLQFTSKITERAVFNQL 552
>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
Length = 1039
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 GAKDGGSNTKRSVSTLSFVRDGTNRVPAEEL 280
GAKD G+N R VS L F T R +L
Sbjct: 120 GAKDTGNNNLRPVSNLQFTSRITERAVFNQL 150
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 188 GAKDGGSNTKRSVSTLSFVRDGTNRVPAEEL 280
GAKD G+N R VS L F T R +L
Sbjct: 27 GAKDTGNNNLRPVSNLQFTYKITERAVFNQL 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,370
Number of Sequences: 59808
Number of extensions: 240347
Number of successful extensions: 691
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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