Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0602
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC024818-4|AAF60782.5|  457|Caenorhabditis elegans Hypothetical
           protein Y54H5A.4 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 45  EWPKLKKNLINITFQHYLPTSNPSAQ 122
           EW KL KN  N+ F  Y P     AQ
Sbjct: 428 EWEKLDKNYRNLLFTDYRPVETNVAQ 453


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +3

Query: 105 SNPSAQFPPRTFACATTKNHYRLDLRTLGLKMVVRTPKGLFPHFRLSGMVRIVYRQRNWF 284
           S PS+    +  AC+T K+H  +D       +   +P  +  + R     R+   +R  F
Sbjct: 90  SAPSSIARNKVLACSTPKDHLEID-----RDLFKTSPIEVHGNLRTYSPKRLCQDKRIIF 144

Query: 285 RRQELRHVCSH 317
           R Q++R++  H
Sbjct: 145 RNQKIRNMAIH 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,945
Number of Sequences: 27780
Number of extensions: 185025
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)