Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0602
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 28 3.1
At5g13220.3 68418.m01518 expressed protein 28 4.2
At5g13220.2 68418.m01517 expressed protein 28 4.2
At5g13220.1 68418.m01519 expressed protein 28 4.2
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 27 5.5
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 27 5.5
At3g11420.1 68416.m01393 fringe-related protein similar to hypot... 27 7.3
At2g25410.1 68415.m03043 hypothetical protein 27 9.6
At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to ... 27 9.6
At1g26680.1 68414.m03250 transcriptional factor B3 family protei... 27 9.6
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 261 RFVPSLTNESVETDLLVFEPPSLAPEYEGQDDNDSW 154
R V +LT S ETD L+ E SL + E + D+D W
Sbjct: 52 RKVETLTGISGETDSLIAEQGSLRGD-EDESDDDDW 86
>At5g13220.3 68418.m01518 expressed protein
Length = 185
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -2
Query: 234 SVETDLLVFEPPSLAPEYEGQD-DNDSWLLHR---QKFLEETEQK 112
S+ETDL V P +L P+ GQ+ + D + R Q+FLE+ +++
Sbjct: 141 SMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185
>At5g13220.2 68418.m01517 expressed protein
Length = 185
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -2
Query: 234 SVETDLLVFEPPSLAPEYEGQD-DNDSWLLHR---QKFLEETEQK 112
S+ETDL V P +L P+ GQ+ + D + R Q+FLE+ +++
Sbjct: 141 SMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185
>At5g13220.1 68418.m01519 expressed protein
Length = 197
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -2
Query: 234 SVETDLLVFEPPSLAPEYEGQD-DNDSWLLHR---QKFLEETEQK 112
S+ETDL V P +L P+ GQ+ + D + R Q+FLE+ +++
Sbjct: 141 SMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 180 EGQDDNDSWLLHRQKFLEETEQK 112
E +DD++ HRQK LEE E +
Sbjct: 130 ESKDDDEELSAHRQKMLEEIEHE 152
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 180 EGQDDNDSWLLHRQKFLEETEQK 112
E +DD++ HRQK LEE E +
Sbjct: 130 ESKDDDEELSAHRQKMLEEIEHE 152
>At3g11420.1 68416.m01393 fringe-related protein similar to
hypothetical protein GB:AAC23643 [Arabidopsis thaliana]
+ weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 505
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 182 TKVKTIMILGCCTGKSSWRKLSRRIRCWEIM 90
TKVK I++ T W K RR +C E+M
Sbjct: 451 TKVKRILVTSMKTDPEYWNKAPRR-QCCEVM 480
>At2g25410.1 68415.m03043 hypothetical protein
Length = 377
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 54 KLKKNLINITFQHYLPTSNPSAQFPPRTFACA 149
KL L+N+ F + P N S Q P +F+C+
Sbjct: 4 KLLPLLLNLIFLFFFPLLNASEQKPCYSFSCS 35
>At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to
regulatory protein NPR1 (nonexpresser of PR genes 1,
NPR1; noninducible immunity 1, Nim1; salicylic acid
insensitive 1, Sai1) [Arabidopsis thaliana]
SWISS-PROT:P93002
Length = 593
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 309 CSHVACSPN*DFT*SFIYFCFL 374
C HVAC P DF +Y F+
Sbjct: 155 CCHVACRPAVDFMLEVLYLAFI 176
>At1g26680.1 68414.m03250 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 920
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +1
Query: 187 WG*RWWF--EHQKVCFHTFVCQGWYESCTGRGTGSG 288
WG W +H K T + +GW C G G +G
Sbjct: 767 WGREWKLVLKHYKSNCFTIIKRGWTSFCQGNGLKAG 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,718
Number of Sequences: 28952
Number of extensions: 174795
Number of successful extensions: 546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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