Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0601
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    29   0.34 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    29   0.60 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.2  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   7.3  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.3  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   7.3  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   9.7  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 416 IVYTPTVGLACQKFGLVYRRPE 481
           I+YTPT G A ++F  +YR PE
Sbjct: 101 IIYTPTEGDAIKQFSDIYRYPE 122



 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 140 IICPNMLRGIDHIKDPRLNKGLAFTLEEHK 229
           I CP  L+G+  +  PR NK  AFT EE +
Sbjct: 9   IECP--LKGVTLLNSPRYNKDTAFTPEERQ 36


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
 Frame = +2

Query: 20  FFKSFLTFIFERTKFKRNIINGLQPKYLDQRRNMHEITGNIICPNMLRGIDHIK------ 181
           FF S  TF+F+  +F  N+I+ L+ + LD + + +E+  ++   +    I  +K      
Sbjct: 530 FFHS--TFLFQNYEFSDNVISLLKSRRLD-KSDRNELAEDLNSDDRYNFISRLKKFIFME 586

Query: 182 ------DPRLNKGLAFTLEEHKL*VFTDFWPQI*NPGRTVGVL 292
                    L+K + FTL+   +  F D +P +    + +G L
Sbjct: 587 KEKNGLSRSLSKSITFTLDSASVSEFEDVYPDLQFQCQVIGAL 629


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 44   IFERTKFKRNIINGLQPKYLDQRRNMHEI 130
            +F  T     +INGLQPK++ + RN+ E+
Sbjct: 1256 VFMATVLAVPLINGLQPKFI-ELRNVFEV 1283


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 515 MXLYQNSDILSSRVSCKRDQI 453
           M LYQ  D L   V C+ DQI
Sbjct: 1   MHLYQLEDELKKNVFCREDQI 21


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +2

Query: 83  GLQPKYLDQRRNMHEITGNIICPNMLRGIDHIKDPRLNKGLAFTLEEHKL*VFTDF 250
           G+ P++     N  E+   +IC  + RG   + +P      +   + +K    TDF
Sbjct: 833 GIDPEFTQM--NQQELLAEMICQRLSRGYQIVVNPAAAVSYSGNPKANKAGTITDF 886


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 334 YLFKSSSYLSNEIWQNSNCSSWVLNLGPKVR 242
           + F+  S++ N    NSN  SW+L    +VR
Sbjct: 305 FSFEHLSFIWNYFDANSNAFSWLLRFDSQVR 335


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 8   FTNTFFKSFLTFIFERTKFKRNIINGLQPKYLDQRRNMHEITG 136
           FT + F   + F+FE       II  L  +Y+D +  M ++ G
Sbjct: 155 FTRSTFDLLVQFLFENEVNGSGIIIRLLNQYIDIKITMPQVEG 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,262
Number of Sequences: 5004
Number of extensions: 42765
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)