Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0601
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 48 5e-06
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117... 48 5e-06
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 46 2e-05
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 46 2e-05
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 42 2e-04
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 39 0.002
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 38 0.004
08_01_0637 + 5537421-5539547 27 7.5
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +2
Query: 416 IVYTPTVGLACQKFGLVYRRPERIIYHYSDKDXYLIF*RTGPE 544
+VYTPTVG ACQK+G +YRRP+ + DK L + PE
Sbjct: 116 VVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKILEVLKNWPE 158
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIXKFMPLCTRLRLDWRARNLVSFTGDPRG*YITILIKTHI 518
+LQ+RNE+LF+ LL ++ + +P+ + + S P+G YI++ K I
Sbjct: 93 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKI 149
>02_05_0228 -
27010982-27011272,27011401-27011506,27011616-27011767,
27011919-27011930
Length = 186
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +2
Query: 416 IVYTPTVGLACQKFGLVYRRPERIIYHYSDKDXYLIF*RTGPE 544
+VYTPTVG ACQK+G +YRRP+ + DK L + PE
Sbjct: 25 VVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKILEVLKNWPE 67
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 46.4 bits (105), Expect = 2e-05
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Frame = +2
Query: 83 GLQPKYLDQRRNMHE-ITGNIICPNMLRGIDHIKDPRLNKGLAFTLEEHKL*VFTDFWPQ 259
G++ Y + R + IT +C + G ++DPR NKGL+FT +E P
Sbjct: 8 GVEDAYGEDRATEDQPITPWAVC--VASGHSLLRDPRHNKGLSFTEKERDAHYLRGLLPP 65
Query: 260 I--*NPGRTVGVLPNFIR*I*RRFE*IPLFD*VAR*E*KTIFQFT*L*HRXIHAIVYTPT 433
+ + +L N + + L D R E + ++ + +VYTPT
Sbjct: 66 VVLSQELQEKRLLQNVRQFQVPLQRYMALMDLQERNE-RLFYKLLIDNVEELLPVVYTPT 124
Query: 434 VGLACQKFGLVYRRPERIIYHYSDKDXYLIF*RTGPE 544
VG ACQK+G ++RRP+ + +K L R PE
Sbjct: 125 VGEACQKYGSIFRRPQGLYISLKEKGRILELLRNWPE 161
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIXKFMPLCTRLRLDWRARNLVSFTGDPRG*YITILIKTHI 518
+LQ+RNE+LF+ LL ++ + +P+ + + S P+G YI++ K I
Sbjct: 96 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGRI 152
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 416 IVYTPTVGLACQKFGLVYRRPERIIYHYSDKDXYLIF*RTGPE 544
+VYTPTVG ACQK+G ++R+P+ + DK L R PE
Sbjct: 185 VVYTPTVGEACQKYGSIFRQPQGLYVSLKDKGKVLDVLRNWPE 227
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIXKFMPLCTRLRLDWRARNLVSFTGDPRG*YITI 500
+LQ+RNE+LF+ LL ++ + +P+ + + S P+G Y+++
Sbjct: 162 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGLYVSL 212
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 416 IVYTPTVGLACQKFGLVYRRPERIIYHYSDKDXYLIF*RTGPE 544
+VYTPTVG ACQK+G ++ RP+ + +K L + PE
Sbjct: 139 VVYTPTVGEACQKYGSIFSRPQGLYISLKEKGKILEVLKNWPE 181
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIXKFMPLCTRLRLDWRARNLVSFTGDPRG*YITILIKTHI 518
+LQ+ NE+LF+ LL ++ + +P+ + + S P+G YI++ K I
Sbjct: 116 DLQEGNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFSRPQGLYISLKEKGKI 172
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 164 GIDHIKDPRLNKGLAFTLEEHK 229
G + ++DPR NKGLAF E +
Sbjct: 54 GYNLLRDPRYNKGLAFNERERE 75
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 410 HA-IVYTPTVGLACQKFGLVYRRPERIIYHYSDK 508
HA IVYTPTVGL CQ + ++RRP + + D+
Sbjct: 175 HAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDR 208
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 416 IVYTPTVGLACQKFGLVYRRPERIIYHYSDK 508
I+YTPTVGL C+ + ++RRP + + DK
Sbjct: 141 IIYTPTVGLVCENYSGLFRRPRGMYFSAKDK 171
>08_01_0637 + 5537421-5539547
Length = 708
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 325 KSSSYLSNEIWQNSNCSSWVLNLGPKVREYLKLVLFEREG 206
K + ++ E W N+ SW + + ++E L + EREG
Sbjct: 395 KMARWMGVEDWWNTKAYSWPIPVSECIQELLVNQVLEREG 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,034,184
Number of Sequences: 37544
Number of extensions: 244014
Number of successful extensions: 495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -