Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0601
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.20 

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
 Frame = +2

Query: 158 LRGIDHIKDPRLNKGLAFTLEEHKL*VFTDFWP-----QI*NPGRTVGVLPNFIR*I*RR 322
           +RG D ++D  LNKGLAFTLEE ++       P     Q     R    L      + + 
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDLEKY 119

Query: 323 FE*IPLFD*VAR*E*KTIFQFT*L*HRXIHAIVYTPTVGLACQKFGLVYRRPERIIYHYS 502
            + + L +       + +F +T      +  IVYTPTVGLAC+K+G+++RRP  +     
Sbjct: 120 IQLMALLERNESLFFRVLFDYT----EELMPIVYTPTVGLACRKYGMIFRRPRGLFISIH 175

Query: 503 DK 508
           DK
Sbjct: 176 DK 177



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 351 LQDRNEKLFFSLLDCDIXKFMPLCTRLRLDWRARNLVSFTGDPRG*YITILIKTHI 518
           L +RNE LFF +L     + MP+     +    R        PRG +I+I  K HI
Sbjct: 125 LLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDKGHI 180


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 116 NMHEITGNIICPNML----RGIDHIKDPRLNKGLAFTLEEHK 229
           N H   G ++ P  +      +DH+KDP+    LA TL EHK
Sbjct: 373 NGHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHK 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,938
Number of Sequences: 59808
Number of extensions: 294527
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)