Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0600
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   213   3e-56
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   104   1e-23
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    80   3e-16
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    74   2e-14
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   2.4  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   4.2  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  213 bits (519), Expect = 3e-56
 Identities = 104/197 (52%), Positives = 124/197 (62%)
 Frame = +1

Query: 67  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 247 PRASSSXLEPGTMDSVRSGPFGQIFRPDNFVFXXXXXXXXXXXXXXXXXC*AXXXXXXXX 426
           PRA    LEPGTMD+V+SG FG +FRPDN ++                            
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 427 XKGSGIV*LPPGIPTDTLAXXXXXXXXSXLLISKIREEYPDRIMNTYSVVPSPKVSDTVV 606
            + +       G                 LL+SKIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180

Query: 607 EPYNATLSVHQLVENTD 657
           EPYNATLS+HQLVEN+D
Sbjct: 181 EPYNATLSMHQLVENSD 197



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = +2

Query: 353 GAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTH 478
           GAGN WAKGHYTEGAEL D+VLDVVR+EAE+CD LQGFQLTH
Sbjct: 96  GAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTH 137


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  104 bits (249), Expect = 1e-23
 Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 3/199 (1%)
 Frame = +1

Query: 70  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 249
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 250 RASSSXLEPGTMDSVRSGPFGQIFRPDNFVFXXXXXXXXXXXXXXXXXC*A--XXXXXXX 423
           RA    LEP  ++++ S  +G ++ P+N +                              
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERIFEDIMDMI 122

Query: 424 XXKGSGIV*LPPGIPTDTLAXXXXXXXXSXLLISKIREEYPDRIMNTYSVVP-SPKVSDT 600
             +  G   L       ++A        S LL  ++ + YP +I+ TYSV P S  VSD 
Sbjct: 123 DREADGSDSLEGFSLLHSIAGGTGSGLGSFLL-ERLNDRYPKKIIQTYSVFPNSQSVSDV 181

Query: 601 VVEPYNATLSVHQLVENTD 657
           VV+PYN+ L++ +L  N D
Sbjct: 182 VVQPYNSLLALKRLTLNAD 200



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 28/42 (66%)
 Frame = +2

Query: 353 GAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTH 478
           GAGNNWA G Y+    + + ++D++ +EA+  D L+GF L H
Sbjct: 99  GAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLH 139


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
 Frame = +1

Query: 67  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 240
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 241 YVPRASSSXLEPGTMDSVRSGPFGQIFRPDNFV 339
           YVPR+    LEP  +D VR+GP+  +F P+  +
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLI 93



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 356 AGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTH 478
           A NN+A+GHYT G ELVD V D +R+ A++C  LQGF + H
Sbjct: 99  ASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFH 139



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = +1

Query: 514 LLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTD 657
           LL+ ++  EY  +    +SV P+P+VS +VVEPYN+ L+ H  ++  D
Sbjct: 152 LLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLAD 199


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
 Frame = +1

Query: 67  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 228
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 229 SGGKYVPRASSSXLEPGTMDSVRSGPFGQIFRPDNFV 339
             GK+VPR+    LEP  +D VR+GP+  +F P+  V
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMV 97



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +2

Query: 356 AGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTH 478
           A NN+A+GHYT G E++DSVL+ +R+ A++C  LQGF + H
Sbjct: 103 ASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFH 143



 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +1

Query: 514 LLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTD 657
           LL+ ++  EY  +    +SV P+P+VS +VVEPYN+ L+ H  ++N+D
Sbjct: 156 LLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSD 203


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 106 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 207
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 371 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 460
           A+GH   G ELV +  D +RK++E+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,047
Number of Sequences: 5004
Number of extensions: 47267
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)