Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0600
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.12 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.85 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.85 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 132  LPELSSDLVAALTSLDMYDFPHFVLFM*TINY--LTLKMLSARSTH 1
            L E + +L  AL+S++   F HFVL M  IN+  +T  ++ AR  H
Sbjct: 870  LVEFALELKKALSSINEQSFNHFVLKM-GINHGPVTAGVIGARKPH 914


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 404 VDSVLDVVRKEAESCDCLQG 463
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 197 WSASMYTTMKPPAASTCPA-HPRRXWSPAPWTLSAL 301
           W  S+ T M+   A+ C A + R  WS  PW L  L
Sbjct: 35  WRDSLPTKMRELNATACAALYERVEWS-GPWILVTL 69


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 381 CPLAQLLPAPVLSEDEVVRTEDLSERSRADRVH 283
           CP+ Q L  PVLS      +   S +S   R H
Sbjct: 312 CPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNH 344


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 318  LPSGQLRLRTVPAPATTGPRDTTRRVLSSS 407
            +PS +L +RT P      P +   R LSSS
Sbjct: 992  VPSAELIVRTEPQRPAGPPINLEARALSSS 1021


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 318  LPSGQLRLRTVPAPATTGPRDTTRRVLSSS 407
            +PS +L +RT P      P +   R LSSS
Sbjct: 988  VPSAELIVRTEPQRPAGPPINLEARALSSS 1017


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,979
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)