Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0599
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    30   0.99 
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    27   9.2  

>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 395 IRTTTANSLXSSXRXRXXDAERSSTRALRPYSSEERR 285
           ++T T +   +S R R  D+E  ++  L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478


>09_04_0308 +
           16567361-16568854,16568946-16569068,16569372-16569649,
           16570316-16571924,16572363-16573781
          Length = 1640

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 173 PRLLLSLPLDAVVK*SVXXHTQXRTAXAFEVTLSPXPSDAPLTSMDVERAL 325
           PRL LSLP    V      H     A A   ++S  P+ +   S D  RA+
Sbjct: 82  PRLTLSLPRSVAVSGGGGGHDAGAAAAAATPSVSLSPNHSVADSFDGHRAV 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,851,774
Number of Sequences: 37544
Number of extensions: 87817
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)