Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0599
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    29   2.1  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    29   2.1  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    28   3.6  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    27   4.8  

>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 266 TLSPXPSDAPLTSMDVERALSFAPRR 343
           T SP PSD    S+DV+R L+F   R
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMR 423


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 266 TLSPXPSDAPLTSMDVERALSFAPRR 343
           T SP PSD    S+DV+R L+F   R
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMR 423


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 443  EQRVXILXGQSPXFPNIRTTTANSLXSSXRXRXXDAERSSTRALRPYSSEERRSGXET 270
            E+R  +L GQSP F  +R           R R  +A++   +A+     E R+   +T
Sbjct: 1383 EERSGLLAGQSPDFSEVRAQIEEENRMKERSRKREAKK---KAVEKEKKEHRKEPKKT 1437


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -1

Query: 443  EQRVXILXGQSPXFPNIRTTTANSLXSSXRXRXXDAERSSTRALRPYSSEERRSGXETA 267
            E+R  +L GQSP F  +R           R    +A++ +    +    +E R   + A
Sbjct: 1400 EKRSGLLAGQSPDFSEVRAQIEEENRMKERFTKREAKKKAVEKAKEKEKKEHRKEPKKA 1458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,378,615
Number of Sequences: 27780
Number of extensions: 67642
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)