Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0598
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 80 2e-16
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 1.2
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 26 3.6
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.6
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 4.8
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 25 6.3
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 25 8.4
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 8.4
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 25 8.4
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 80.2 bits (189), Expect = 2e-16
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +3
Query: 225 YLCSREGW*DA-EVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKXGVEAXKTLQI 401
Y+C R+ +VVI+D+ DP+N +RRPISADS I++P K+IALK A + LQ+
Sbjct: 37 YVCVRDNPNGVNQVVIVDLEDPSNVLRRPISADSVILHPKKKIIALK------AQRQLQV 90
Query: 402 FNIEMKSXMKAXTMTEDIVFWKWXSLXTLALXTKMS 509
F++E K+ + + M +D+V+W W S + + T S
Sbjct: 91 FDLEAKAKINSYVMNQDVVYWTWISDSVIGMVTDTS 126
Score = 59.7 bits (138), Expect = 3e-10
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +1
Query: 115 MAQVLPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
MAQ LPIRF E LQL +VGI P+S F +T+ESDK++CVR+
Sbjct: 1 MAQQLPIRFSEVLQLASVGIQPSSFGFANVTLESDKYVCVRD 42
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +2
Query: 509 VYHWSMEGDSTPVKMFDRHSSLADCQIINY 598
V+HW++ G S PVKMFDRHSSL QII+Y
Sbjct: 127 VFHWTVSG-SDPVKMFDRHSSLNGTQIISY 155
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 492 ERVCXVKXTSRKQCLRSWXAP 430
E VC + SRK C RSW P
Sbjct: 266 ELVCQIHEESRKFCYRSWVRP 286
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 3.6
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -3
Query: 311 DWSSNWICWIC 279
DW+ NW+ W C
Sbjct: 22 DWAKNWVFWTC 32
>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 299 NWICWICHINNDNFCVSPTFSRTQINLSDSMVRVLK-EIEAGLIPTLVSCKCS 144
NWI I ++ N F +++ +L +LK E++ ++P LV+C CS
Sbjct: 87 NWI--ITYLENSEF-TKENYAQMINSLYRYQDAILKSELKDSILPKLVNCACS 136
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 485 TRSGHQDVVYHWSMEGDSTPVKMFDRHSSLAD 580
T+ H ++YH G S +K+F SLAD
Sbjct: 167 TKFPHFGILYHPESVGSSKSLKIFKNFLSLAD 198
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 300 RRPISADSAIMNPASKVIALKGKXGVEAXKT-LQIFNIEMKSXMKAXTMT 446
RRP S D M+ ASKV A + +T LQ+ +S M T
Sbjct: 182 RRPTSLDYIFMSAASKVFAAVNMYPLLVIRTRLQVMRSPHRSIMNLVLQT 231
>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 137 RIGNTCAMFIDHSVLHKPKTKKRAT 63
++GN M + H ++H P T+ RAT
Sbjct: 12 KVGN---MLLQHRIVHAPMTRLRAT 33
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 488 RSGHQDVVYHWSMEGDSTPV 547
R GHQDVV H + +T V
Sbjct: 846 REGHQDVVQHTDLNQSNTKV 865
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 257 CVSPTFSRTQINLSDSMVRVLKEIEAGLIPTLVSC 153
C SP S T L+ ++ + + G P L+SC
Sbjct: 109 CTSPNDSSTWDTLTKLKNEIINDFDKGNKPLLISC 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,487
Number of Sequences: 5004
Number of extensions: 42558
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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