Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0598
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 97 1e-20
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 97 1e-20
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 31 0.70
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385... 29 2.8
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 29 2.8
01_06_0211 + 27571069-27571128,27571563-27571706 28 6.5
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/95 (48%), Positives = 62/95 (65%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKXGVEAXKTLQIF 404
Y+C RE VVI+DMA P P+RRPI+ADSA+MNP ++++ALK + LQIF
Sbjct: 38 YICVRETSPQNSVVIVDMAMPAQPLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIF 97
Query: 405 NIEMKSXMKAXTMTEDIVFWKWXSLXTLALXTKMS 509
NIE K+ +K+ M E +VFWKW + L L T+ S
Sbjct: 98 NIEAKTKIKSHQMPEQVVFWKWITPKLLGLVTQTS 132
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +2
Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINY 598
Q VYHWS+EGDS P KMFDR ++LA+ QIINY
Sbjct: 130 QTSVYHWSIEGDSEPAKMFDRTANLANNQIINY 162
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
PI +E L LT++GI P ++F +TMES+K+ICVRE
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRE 43
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/95 (48%), Positives = 62/95 (65%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKXGVEAXKTLQIF 404
Y+C RE VVI+DMA P P+RRPI+ADSA+MNP ++++ALK + LQIF
Sbjct: 38 YICVRETSPQNSVVIVDMAMPAQPLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIF 97
Query: 405 NIEMKSXMKAXTMTEDIVFWKWXSLXTLALXTKMS 509
NIE K+ +K+ M E +VFWKW + L L T+ S
Sbjct: 98 NIEAKTKIKSHQMPEQVVFWKWITPKLLGLVTQTS 132
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +2
Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINY 598
Q VYHWS+EGDS P KMFDR ++LA+ QIINY
Sbjct: 130 QTSVYHWSIEGDSEPAKMFDRTANLANNQIINY 162
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
PI +E L LT++GI P ++F +TMES+K+ICVRE
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRE 43
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 368 FAFQSNDFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFS 237
F F ++ W++D V T WS + C ++DN C P+F+
Sbjct: 395 FKFLVDNLAIWLNDGVVLTGWSGITVSIHCG-DDDNSCAFPSFT 437
>09_04_0573 +
18636083-18636237,18637842-18638365,18638420-18638529,
18638639-18638677,18638724-18638764,18638862-18638960,
18639405-18639576
Length = 379
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 377 NTXFAFQSNDFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFSRTQINLSD--SMV 204
NT + TS+ H +VCTD+S C +C + D+ F + SD MV
Sbjct: 200 NTDSPQTTESSTSYAHGKKVCTDYSVT-ACIVCSLVFDSHGNPQAFLEMEGACSDLWLMV 258
Query: 203 RVLKEI 186
VL +I
Sbjct: 259 HVLGQI 264
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 410 DVEDLKCFXSFNTXFAFQSNDFTSWIHDSRVCTDWSSNWIC 288
D E F FN+ F + DF +S CTD + +IC
Sbjct: 340 DFEGHALFIGFNSSFFLREEDFPMLTPNSVYCTDDTVTYIC 380
>01_06_0211 + 27571069-27571128,27571563-27571706
Length = 67
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 125 YYRYGFKNIYSLPMWE 172
Y+ YG+ NI+ L MWE
Sbjct: 7 YHTYGYNNIFILDMWE 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,086
Number of Sequences: 37544
Number of extensions: 274287
Number of successful extensions: 702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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