Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0598
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    95   4e-20
U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    28   4.4  
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    28   4.4  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 46/79 (58%), Positives = 59/79 (74%)
 Frame = +3

Query: 258 EVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKXGVEAXKTLQIFNIEMKSXMKAX 437
           +VVIID+AD  NP RRPISADS IM+P +K++ALK      + KTLQIFNIE+K+ +KA 
Sbjct: 47  QVVIIDLADTANPTRRPISADSVIMHPTAKILALK------SGKTLQIFNIELKAKVKAH 100

Query: 438 TMTEDIVFWKWXSLXTLAL 494
              ED+V+WKW S  T+AL
Sbjct: 101 QNVEDVVYWKWISEKTIAL 119



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = +2

Query: 509 VYHWSMEGDSTPVKMFDRHSSLADCQIINY 598
           VYHWS+EGD+ PVKMFDRH SLA  QIINY
Sbjct: 125 VYHWSIEGDAAPVKMFDRHQSLAGTQIINY 154



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 127 LPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGE 252
           LPI+F EHLQL N GI   +I+F+ +TMESDK I VRE +G+
Sbjct: 3   LPIKFHEHLQLPNAGIRVPNITFSNVTMESDKNIVVREMIGD 44


>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 342 SKVIALKGKXGVEAXKTLQIFNIEMKSXMKAXTMTEDIVFW 464
           S+++++K     +    ++ FN+ ++S MK    T  IVFW
Sbjct: 236 SEILSIKPNKPTKFPLRMKSFNVTIESSMKIFDYTIPIVFW 276


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -3

Query: 350 DFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFSRTQINLS 216
           DFT+W +D + C    ++W+  +  +N  +   +  + +  I LS
Sbjct: 155 DFTNWPYDQQSCPIVITDWVYGLGQVNLSDPATAAGYGKPTIRLS 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,729
Number of Sequences: 27780
Number of extensions: 240792
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)