Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0598
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    97   1e-20
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...    94   6e-20
At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase, p...    31   0.77 
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    29   1.8  
At4g11655.1 68417.m01863 transmembrane protein, putative contain...    29   2.4  
At5g04320.1 68418.m00424 expressed protein                             29   3.1  
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    28   5.4  
At4g13920.1 68417.m02154 disease resistance family protein / LRR...    27   7.2  

>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1703

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 48/95 (50%), Positives = 61/95 (64%)
 Frame = +3

Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKXGVEAXKTLQIF 404
           Y+C RE      VVIIDM  P  P+RRPI+ADSA+MNP SK++ALK +        LQIF
Sbjct: 38  YICVRETSPQNSVVIIDMNMPMQPLRRPITADSALMNPNSKILALKAQVPGTTQDHLQIF 97

Query: 405 NIEMKSXMKAXTMTEDIVFWKWXSLXTLALXTKMS 509
           NIE K+ +K+  M E +VFWKW +   L L T+ S
Sbjct: 98  NIEAKAKLKSHQMPEQVVFWKWITPKMLGLVTQNS 132



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINY 598
           Q+ VYHWS+EGDS PVKMFDR ++LA+ QIINY
Sbjct: 130 QNSVYHWSIEGDSEPVKMFDRTANLANNQIINY 162



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +1

Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
           PI  +E L L ++GIN   I+F  +TMESDK+ICVRE
Sbjct: 7   PITMKEVLTLPSIGINQQFITFTNVTMESDKYICVRE 43


>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1705

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 46/95 (48%), Positives = 60/95 (63%)
 Frame = +3

Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKXGVEAXKTLQIF 404
           Y+C RE      VVIIDM  P  P+RRPI+ADSA+MNP S+++ALK +        LQIF
Sbjct: 38  YICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIF 97

Query: 405 NIEMKSXMKAXTMTEDIVFWKWXSLXTLALXTKMS 509
           NIE K+ +K+  M E + FWKW +   L L T+ S
Sbjct: 98  NIEAKAKLKSHQMPEQVAFWKWITPKMLGLVTQTS 132



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 500 QDVVYHWSMEGDSTPVKMFDRHSSLADCQIINY 598
           Q  VYHWS+EGDS PVKMFDR ++LA+ QIINY
Sbjct: 130 QTSVYHWSIEGDSEPVKMFDRTANLANNQIINY 162



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +1

Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
           PI  +E L L +VGI    I+F  +TMESDK+ICVRE
Sbjct: 7   PIIMKEVLTLPSVGIGQQFITFTNVTMESDKYICVRE 43


>At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase,
           putative Strong similarity to Arabidopsis 2A6
           (gb|X83096), tomato ethylene synthesis regulatory
           protein E8 (SP|P10967)
          Length = 345

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 204 HHGIGQVYLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKG 365
           +H   ++Y  S   W D+ V  +D  DP+NP   P++   A++  +  V++L G
Sbjct: 118 YHNNFELYSSSAGNWRDSFVCYMD-PDPSNPEDLPVACRDAMIGYSKHVMSLGG 170


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 99  GVINKHGASITDTVSRTFTAYQCGNQSCFYFFQ 197
           G++NK GAS+   V++T +  +  +Q  FY+ +
Sbjct: 276 GIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLE 308


>At4g11655.1 68417.m01863 transmembrane protein, putative contains 4
           transmembrane spanning domains, PMID:11152613
          Length = 208

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -3

Query: 353 NDFTSWIHDSRVC---TDWSSNWICWICHINNDNFCVSPTFSRTQINLSDSMVRVLKEIE 183
           +D+ S+I D  +C      SS  I WI HIN D        S   +++S S   VL    
Sbjct: 136 SDYISFIFDQVICYLLVSSSSVAIAWIQHINEDAIKTLRNNSIVSVSMSFSAFLVL--TL 193

Query: 182 AGLIPTLVSCK 150
           +GL+     CK
Sbjct: 194 SGLLSGYKLCK 204


>At5g04320.1 68418.m00424 expressed protein
          Length = 419

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 230 QINLSDSMVRVLKEIEAGLIPTL---VSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATL 60
           ++   +++++V K +E  ++P        K S +     C  F  H + HK   +KR T 
Sbjct: 62  ELGCKNALLKVKKHLEEQVLPRTHHESKDKVSASASDGDCKSFQVHDIKHKDTKRKRTTR 121

Query: 59  LKS 51
           +KS
Sbjct: 122 IKS 124


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 497 HQDVVYHWSMEGDSTPVKMFDR 562
           ++D++ HW +EG   PVK  D+
Sbjct: 316 YRDLIVHWMLEGYFDPVKSVDK 337


>At4g13920.1 68417.m02154 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 891

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 FKNIYSLPMWESILLLFLSTLSPWNRTS 223
           FKN +S+P  +S L+L L T + W   +
Sbjct: 37  FKNEFSIPSPDSDLMLILQTTAKWRNNT 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,464
Number of Sequences: 28952
Number of extensions: 225400
Number of successful extensions: 569
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)