Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0596
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.19 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.4  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    27   3.1  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    26   4.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   5.5  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.6  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   9.6  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   9.6  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   9.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   9.6  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 46  DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 168
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 85  PDSMATITMKPEYPPSEVYSTSEPPP 162
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 85  PDSMATITMKPEYPPSEVYSTSEPPP 162
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 73  KEHQPDSMATITMKPEYPPSEVYSTS 150
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 613 LFSRTVGLRTLITRVW*VILIVVNFLQFVFVYFGLAW 503
           LF   + L T+I  +  +IL +VN    +  +FGL+W
Sbjct: 19  LFLMKIPLFTVIVALLTIILGIVNIFLPIVDFFGLSW 55


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 297 ADGMMNELLPNSKPNKGSQDEGGSD 223
           A+ + N+L  N  PNK   +EG +D
Sbjct: 318 ANSVHNQLAANEFPNKSQSEEGSND 342


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 152 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 63
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 132 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 34
           RRRIFR H      +W+  FF   L++  +IY+
Sbjct: 32  RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 82  QPDSMATITMKPEYPPSEVYSTSEPP 159
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 551 RRQFSAICLRLFWTRMVECV 492
           +R +SA+CLR ++  +V C+
Sbjct: 458 QRDWSAVCLRFYFIILVVCI 477


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 118 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGT 249
           E+    + + S  PP  + + STSV  A   A+ +V S+  LG+
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGS 258


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 430 CLQCYLRRASRHLHDPVSSKTTHS 501
           C QCYL    +++H+ + +K+T +
Sbjct: 292 CYQCYLISVGQNVHEYLRAKSTET 315


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 463 HLHDPVSSKTTHSTMRVQNKRRQIAEN 543
           H H P+S+ T +  M+ Q +  Q+A++
Sbjct: 137 HRHQPLSNITNNELMKYQEEATQLAKD 163


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 73  KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR 171
           K    DS  + T       SE YSTS+ PP  R
Sbjct: 305 KRQSLDSETSETSSESESESEYYSTSKQPPVKR 337


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 112 KPEYPPSEVYSTSEPPPAYRHRVS 183
           K  Y P++  +T + PP Y H VS
Sbjct: 201 KGRYYPNKALATDKDPPLYLHIVS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,576
Number of Sequences: 5004
Number of extensions: 52563
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)