Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0596
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62010.1 68416.m06964 expressed protein                             31   0.67 
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    31   0.67 
At2g11620.1 68415.m01249 hypothetical protein                          31   0.89 
At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein co...    29   2.1  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    29   2.7  
At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1 ...    29   3.6  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    28   6.3  
At3g47620.1 68416.m05184 TCP family transcription factor, putati...    28   6.3  
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    27   8.3  
At5g55690.1 68418.m06943 MADS-box protein (AGL47)                      27   8.3  

>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 294 QLEQLDAMLDKELALEGRAYGNDALVADE 380
           ++EQ++A L +++ +E   YGN  LV DE
Sbjct: 124 RVEQMEARLKEDILMEASRYGNKILVTDE 152


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +3

Query: 297 LEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSVLPE 449
           L +LD++ D  L    R  GN+A V D+P P+   HA HG PP   +  PE
Sbjct: 89  LRKLDSIKDHLL----RGGGNNATVVDQP-PMG-FHAHHGPPPSYYNPYPE 133


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 64  VMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 183
           V+  +   + M  + MKPE PP ++Y   +P P  +   S
Sbjct: 253 VLRYDGNNNGMQGVLMKPEKPPQDLYGQCQPQPQIQRNFS 292


>At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 638

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -3

Query: 450 SQVTLKTAWAVLHAKRGHLLVAKAHPLPGHHFRRLCLPKRVLCRALHPAALADGMMNELL 271
           S  + K++  VL+    + L+AKA       F++L        +A+ P  L DG+ N L 
Sbjct: 117 SNKSFKSSDGVLN--HANSLLAKAQSKLEEEFKQLLAS---YSKAVEPDRLFDGLPNSLR 171

Query: 270 PNSKPNKGSQDEGG 229
           P+S  + G +  GG
Sbjct: 172 PSSDGDGGGKPHGG 185


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 493  SSLKRLGREDDGWLVSGNTED 431
            S ++RLG + + W+V G+T+D
Sbjct: 1148 SEIRRLGEDPNSWMVGGSTDD 1168


>At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1
           like protein identical to SP|Q9S7R5 TWIN SISTER of FT
           protein (TFL1 like protein) {Arabidopsis thaliana};
           contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 175

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 270 VAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHAL 410
           V + S+ HQ E L  ++    A  G A+GN+ +  + P P +  H +
Sbjct: 74  VPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRI 120


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 255 LASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDA-LVADEPLPLANAHALHGVPPML 431
           L  S V   ++   +E +   L K+     R YG D  +VA  P P+++A A   +PP  
Sbjct: 66  LQISTVTTTTTTAAMEGISGGLMKKKRGRPRKYGPDGTVVALSPKPISSAPAPSHLPPPS 125

Query: 432 SSVLPETSQPSSSR 473
           S V+  ++    S+
Sbjct: 126 SHVIDFSASEKRSK 139


>At3g47620.1 68416.m05184 TCP family transcription factor, putative
           auxin-induced basic helix-loop-helix transcription
           factor - Gossypium hirsutum, EMBL:AF165924
          Length = 489

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -3

Query: 441 TLKTAWAVLHAKRGHLLVAKAHPLPGHHFRRLCLPKRVLCRALHPAALADGMMNELLPNS 262
           ++ TA A L+ + G   V       G HF     P   L      A  ++  +NE   +S
Sbjct: 372 SINTAAAALY-RSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINE---DS 427

Query: 261 KPNKGSQDEGGSDH 220
             N+G + +GG DH
Sbjct: 428 NNNEGGRSDGGGDH 441


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 64  VMEKEHQPDSMA--TITMKPEYPPSEVYSTSEPPP 162
           + E+E +P  +   T  +KP  PP +  +T  PPP
Sbjct: 222 IEEEESEPKEIQIDTFVVKPSSPPQQPPATPPPPP 256


>At5g55690.1 68418.m06943 MADS-box protein (AGL47) 
          Length = 277

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 528 TNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCS 647
           ++C K  T++   +    +V  PT+  K  T  K+LD+CS
Sbjct: 84  SSCTKTYTVQECLEKNNTKVEKPTIATKYPTWDKKLDQCS 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,587
Number of Sequences: 28952
Number of extensions: 297737
Number of successful extensions: 1431
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)