Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0595
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25490 Cluster: Apolipophorins precursor [Contains: Apo...    90   5e-17
UniRef50_Q5YYK8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q1L851 Cluster: MRNA, , clone: SY 0544; n=4; Schizosacc...    33   8.4  

>UniRef50_Q25490 Cluster: Apolipophorins precursor [Contains:
            Apolipophorin-2 (Apolipophorin II) (apoLp-2);
            Apolipophorin-1 (Apolipophorin I) (apoLp-1)]; n=5;
            Ditrysia|Rep: Apolipophorins precursor [Contains:
            Apolipophorin-2 (Apolipophorin II) (apoLp-2);
            Apolipophorin-1 (Apolipophorin I) (apoLp-1)] - Manduca
            sexta (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 3305

 Score = 89.8 bits (213), Expect = 5e-17
 Identities = 41/53 (77%), Positives = 47/53 (88%)
 Frame = +3

Query: 504  FRFTTEEADRKLSIVGHLVPXKRVDXTADIILSGDKKNIAHGALFLQDXLVKA 662
            + FTTEE++RKLS VGHL+P KRVD + DIILSGDKKNIAHGALFLQD LVK+
Sbjct: 2318 YEFTTEESNRKLSYVGHLIPEKRVDISTDIILSGDKKNIAHGALFLQDNLVKS 2370



 Score = 86.6 bits (205), Expect = 5e-16
 Identities = 41/80 (51%), Positives = 53/80 (66%)
 Frame = +2

Query: 41   SSDSPYIFXXEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPXLDKEVVIK 220
            S D P+    EACLDLDK + GHKTS R+L++ SN+ +++   AEIGFFHP ++KE VI+
Sbjct: 2163 SQDLPFPIKGEACLDLDKNRPGHKTSARFLVDYSNSGSEDKAVAEIGFFHPKIEKEAVIR 2222

Query: 221  SNAVFKVPEPNHIFSNHQSA 280
             NA  K PE N  F    SA
Sbjct: 2223 LNAFMKRPE-NGCFKIESSA 2241



 Score = 77.4 bits (182), Expect = 3e-13
 Identities = 34/70 (48%), Positives = 47/70 (67%)
 Frame = +1

Query: 298  GADRVSKLLLDVSPTKFVFLAQTPFVKVIDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSV 477
            G DRV+K++ + +P    FLA TPFVK ID+EG+ +V  + +TQQ   R  LLEGK V +
Sbjct: 2249 GTDRVAKVMFETTPNSVKFLADTPFVKAIDVEGSFNVNQQQRTQQCLFRICLLEGKPVQM 2308

Query: 478  QXLAKDFQYF 507
              L KD+QY+
Sbjct: 2309 SALVKDYQYY 2318


>UniRef50_Q5YYK8 Cluster: Putative uncharacterized protein; n=1;
           Nocardia farcinica|Rep: Putative uncharacterized protein
           - Nocardia farcinica
          Length = 120

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 499 GSLSPXXGR*PPCPLEA*TS-TWPAGSSPCFA 407
           G+++P  G   PCPL+     TWPAG+ P +A
Sbjct: 8   GTMAPVTGAPEPCPLDCLVEITWPAGARPWWA 39


>UniRef50_Q1L851 Cluster: MRNA, , clone: SY 0544; n=4;
           Schizosaccharomyces pombe|Rep: MRNA, , clone: SY 0544 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 306

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +2

Query: 80  LDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPXLDKEVVIKSNAVFK-----VP 244
           L +++K +  + S      +++N  QE    +     P L+K  ++ SN  +K     +P
Sbjct: 205 LPMEEKSESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEK-CILNSNTAYKEDQSVLP 263

Query: 245 EPNHIFSNHQSAYVXPLSALIAS 313
            PNH+  NH +A    L  L  S
Sbjct: 264 NPNHVLLNHLAAANTQLGVLALS 286


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,950,344
Number of Sequences: 1657284
Number of extensions: 11987775
Number of successful extensions: 28212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28207
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)