Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0595
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    33   0.050
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.1  
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    28   1.4  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = +2

Query: 80  LDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPXLDKEVVIKSNAVFK-----VP 244
           L +++K +  + S      +++N  QE    +     P L+K  ++ SN  +K     +P
Sbjct: 197 LPMEEKSESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEK-CILNSNTAYKEDQSVLP 255

Query: 245 EPNHIFSNHQSAYVXPLSALIAS 313
            PNH+  NH +A    L  L  S
Sbjct: 256 NPNHVLLNHLAAANTQLGVLALS 278


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 440 NLACWVFALLCTSTVPSKSIT-FTNGVWAKKTNLV 339
           N  CW+F  +     P++S++ FT+G+ AK+ NL+
Sbjct: 215 NFVCWLFDNM-EKDAPTESVSNFTDGINAKQLNLM 248


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 107 HKTSVRYLINISNNRNQEAIAAEIGFFHPXLDKEVVIKSNAVF 235
           H    R + NI N + +++I  +  ++H     E +IK+ A F
Sbjct: 120 HVPDERLVSNIKNTQTKDSITRDSAYYHRKTMTESIIKTLAAF 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,616
Number of Sequences: 5004
Number of extensions: 49347
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)