Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0595
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15060.1 68417.m02314 F-box protein-related contains weak sim...    28   6.5  
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ...    28   6.5  
At2g10440.1 68415.m01097 hypothetical protein                          27   8.6  

>At4g15060.1 68417.m02314 F-box protein-related contains weak
           similarity to F-box domain Pfam:PF00646
          Length = 572

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 271 MIREYMIWFRDLEDCVRLDDYLLIK 197
           MI+E ++ FRD++   RL D LL+K
Sbjct: 160 MIQELLLSFRDMDKISRLPDDLLVK 184


>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 669

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
 Frame = +2

Query: 152 NQEAIAAEIGFFHPXLDKEVVIKSNAVFKVPEPNHIFSNHQSAYVXPLSALI------AS 313
           N   +  + GF HP L+  +  +  A     +P H  + H S    P+  L         
Sbjct: 71  NGNCLNPKCGFRHPPLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMK 130

Query: 314 PNCC*MFHQPNSFSWPKHH 370
            + C   H PN  ++ K H
Sbjct: 131 GDMCSFLHTPNPAAYKKQH 149


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 361 QTPFVKVIDLEGTVDVQSKAKTQQAKLRFKLLEG--KEVSVQXLAKDFQYFGSQQKRQTA 534
           ++P   V ++  T+D  SK  TQ+  L F        E  +  L K FQ    +   ++ 
Sbjct: 620 ESPVSGVDEINSTLDSSSKLGTQETPLLFVPPPEPITERPIDRLIKAFQAASPKSLAESV 679

Query: 535 SSLSSVI 555
           S +SSVI
Sbjct: 680 SEISSVI 686


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,679
Number of Sequences: 28952
Number of extensions: 267351
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)