Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0594
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0624 + 23772613-23774671,23774737-23775596                       29   3.2  
04_04_1662 - 35149985-35150290,35150548-35150929,35150953-351510...    27   9.9  

>01_05_0624 + 23772613-23774671,23774737-23775596
          Length = 972

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 511 GVLPAAIPAELKPSTGATY 455
           G LP  +P ELKPSTG ++
Sbjct: 618 GELPHCLPTELKPSTGGSF 636


>04_04_1662 -
           35149985-35150290,35150548-35150929,35150953-35151055,
           35151186-35151252
          Length = 285

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 509 AAAAQAYYGNLVGRQHCVTVDCCCHGS 589
           AAAA A  GN  G  H +  D CC+G+
Sbjct: 2   AAAAAAPNGNSNGNHHGLQGDECCYGT 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,252
Number of Sequences: 37544
Number of extensions: 182982
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)