Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0590
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31134| Best HMM Match : Kinesin (HMM E-Value=0)                     38   0.004
SB_43391| Best HMM Match : WGR (HMM E-Value=9.7)                       27   6.7  
SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_31134| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 727

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +1

Query: 124 DMSAEMYTFHEAIDELQRAEEEVLDNHK 207
           D S ++YTFHEA+ +L   E++++D+HK
Sbjct: 624 DNSQDLYTFHEAVSQLNDIEDKIIDDHK 651


>SB_43391| Best HMM Match : WGR (HMM E-Value=9.7)
          Length = 247

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 64  DVDMXPARDDLAHLRSLNXGDMSAEMYTFHEAIDELQRAEEEVLD 198
           D    P+R   AHL + +    +A   +FHE +D ++      LD
Sbjct: 131 DEQSRPSRASCAHLHATDPAAQTAMESSFHERLDSIESEGMSPLD 175


>SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 64  DVDMXPARDDLAHLRSLNXGDMSAEMYTFHEAIDELQRAEEEVLD 198
           D    P+R   AHL + +    +A   +FHE +D ++      LD
Sbjct: 397 DEQSRPSRASCAHLHATDPAAQTAMESSFHERLDSIESEGMSPLD 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,613
Number of Sequences: 59808
Number of extensions: 121670
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)