Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0588
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1542 + 27577257-27577559,27577653-27577730,27577900-275779...    27   3.5  
11_03_0128 - 10437407-10438049,10438097-10438272                       27   4.6  

>07_03_1542 +
           27577257-27577559,27577653-27577730,27577900-27577999,
           27578677-27578819,27579242-27579478
          Length = 286

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 354 PAVXRRGXKLNXRXTS--ILVRGAXXGNGDSVTSNAIAVL 241
           PA+ R G  L  R T   ++  GA   +GD VT+ A AVL
Sbjct: 16  PALRRGGAALRPRRTPSRLVAVGATSSSGDGVTTAADAVL 55


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 186 SSSRGTEYSTTCRTARRXYSKARMACDTGXKAS 88
           S S  +  STTCRT  R    +   C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,134,401
Number of Sequences: 37544
Number of extensions: 87751
Number of successful extensions: 182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)