Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0588
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRXYSKARMACDTGXKAS 88
           ++  S G  SSSRG+ Y  T   R+++R  S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -1

Query: 270 SVTSNAIAVLIWVWRXTDHLTTASNGSDSSSRGTEYSTTCRTARRXYSKARMACDTGXKA 91
           S T+ A + L  + + T   T A NG   S  G+  +TTC+ +    S    A     K+
Sbjct: 194 SSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCKCSAGDVSATTAASACSEKS 251

Query: 90  SWXLKAW 70
                 W
Sbjct: 252 GCLKNQW 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,635,797
Number of Sequences: 27780
Number of extensions: 65361
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)