Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0583
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.53 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.5  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   8.7  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQ 350
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV+
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVE 881


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 330 PFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIG-NIVNIFSKLLY 464
           PF ++   ID       L  V   P+N+DM  +G   V+IF   LY
Sbjct: 838 PFFSNKLFIDQDFILGFLDLVASEPINVDMTDVGTQFVHIFHASLY 883


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 430 VI*LIYFQNYYISRVALLLHGKRFSKSAKYICLI 531
           V+ L  F++  I+ +ALL HGK      K +C I
Sbjct: 631 VLMLKLFKDAGITNLALLNHGKLHGVLTKIVCFI 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,135
Number of Sequences: 5004
Number of extensions: 42414
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)