Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0583
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)                  48   8e-06
SB_28134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)             28   6.8  
SB_31936| Best HMM Match : Glyco_hydro_65C (HMM E-Value=1.1)           28   6.8  
SB_11341| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)              28   6.8  
SB_20300| Best HMM Match : hATC (HMM E-Value=0.036)                    27   9.0  
SB_57822| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)             27   9.0  
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)                 27   9.0  
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)                    27   9.0  

>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
          Length = 93

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 26/71 (36%), Positives = 38/71 (53%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIGN 434
           ++++FL E YD  A   +   L ++  DNSV++ D K  +  LKR +      D   IG 
Sbjct: 5   ERFAFLAEWYDPQAALTRKYQLLFYASDNSVEMYDIKNRRLFLKRSKCDQYKADDFYIGA 64

Query: 435 IVNIFSKLLYI 467
           IVNI S+ L I
Sbjct: 65  IVNIHSRQLKI 75


>SB_28134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 511 HFLKSVFRVAGAQPLIYNNFENILTILPICNISKFNGGSCTRFKTF--LPFF 362
           HF+K+ + + G  PL+++ +E +  +   C    F   + +R K    +P+F
Sbjct: 217 HFVKATYFLEGDGPLVFSCYEKLHAVAQACQAPYFPNQNVSREKPLANVPYF 268


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 386 FQNIFAFLRVYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAI 231
           + N    L V+Y NR++   ++     YFV +L +H+T   I +   YT  +
Sbjct: 57  YTNRVIVLPVHYTNRVI---VLPVNYTYFVIVLPVHYTNRVIVLPVHYTYLV 105


>SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 496 RFSKSAKYICLIKPIAPSEHGK*SLH 573
           RFS+    IC IK    S HGK SLH
Sbjct: 214 RFSQVKNLICGIKTNCSSNHGKTSLH 239


>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
          Length = 488

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 300 EIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDML 422
           ++ ++T+N  PF     ++ ++     L  V+LPP  LD +
Sbjct: 298 DLNEITMNLVPFPKLHYLVSSQTPLYALTDVKLPPRRLDQM 338


>SB_31936| Best HMM Match : Glyco_hydro_65C (HMM E-Value=1.1)
          Length = 291

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -2

Query: 511 HFLKSVFRVAGAQPLIYNNFENILTILPICNISKF 407
           HF+K+ + + G  PL+++ +E +  +   C  + F
Sbjct: 144 HFVKATYFLEGDGPLVFSCYEKLHAVAQACQAAHF 178


>SB_11341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = -2

Query: 577 SDEVIIYHVHLELSA*SGKCTWHFLKSVFRVAGAQPLIYNNFENILTILPICNISKF 407
           SD   + ++ LEL+  +     HF+K+ + + G  PL+++ +E +  +   C    F
Sbjct: 190 SDTERVINLKLELAI-TTDVGEHFIKATYFLEGDGPLVFSCYEKLHAVAQACQAPHF 245


>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
          Length = 1078

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/75 (20%), Positives = 37/75 (49%)
 Frame = +3

Query: 228  IDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPL 407
            ++S+ + +LDK   + +    D D+ + + L        +++ + KKGK  + R      
Sbjct: 954  LNSDDVFILDKGKTIYQK--GDYDDFEPVLLRVSDASGQMKLTEMKKGKGRITRNDFDEK 1011

Query: 408  NLDMLQIGNIVNIFS 452
            ++ +   GN++ ++S
Sbjct: 1012 DVFLFDTGNVLFVYS 1026


>SB_20300| Best HMM Match : hATC (HMM E-Value=0.036)
          Length = 423

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 511 HFLKSVFRVAGAQPLIYNNFENILTILPICNISKF 407
           HF+K+ + + G  PL+++ +E +  +   C    F
Sbjct: 211 HFIKATYFLEGDGPLVFSCYEKLHAVAQACQAPHF 245


>SB_57822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 511 HFLKSVFRVAGAQPLIYNNFENILTILPICNISKF 407
           HF+K+ + + G  PL+++ +E +  +   C    F
Sbjct: 217 HFVKATYFLEGDGPLVFSCYEKVHAVAQACQAPHF 251


>SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)
          Length = 251

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDA---KKGKNVLKR 389
           D Y FL    + + +E  D+   YF  +  V+II +   +KG N   R
Sbjct: 185 DVYEFLRAEDEAEVEEFNDILYEYFGMNARVEIITSSRRRKGNNAKSR 232


>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
          Length = 676

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 574 DEVIIYHVHLELSA*SGKCTWHFLKSVFRVAGAQPLIYNNFENILTILPICNISKF 407
           D VI   + L ++   G+   HF+K+ + + G  PL+++ +E +  +   C    F
Sbjct: 446 DRVINLKLELAITIDVGE---HFVKATYFLEGDGPLVFSCYEKLHAVAQACQAPHF 498


>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
          Length = 865

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 574 DEVIIYHVHLELSA*SGKCTWHFLKSVFRVAGAQPLIYNNFENILTILPICNISKF 407
           D VI   + L ++   G+   HF+K+ + + G  PL+++ +E +  +   C    F
Sbjct: 443 DRVINLKLELAITIDVGE---HFVKATYFLEGDGPLVFSCYEKLHAVAQACQAPHF 495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,060
Number of Sequences: 59808
Number of extensions: 274742
Number of successful extensions: 724
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)