Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0580
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 7e-39
SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 3e-29
SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 33 0.15
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 31 0.81
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37) 29 3.3
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 28 5.7
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.9
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 27 9.9
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 157 bits (381), Expect = 7e-39
Identities = 67/76 (88%), Positives = 74/76 (97%)
Frame = +1
Query: 31 EVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRN 210
+VETPLMN +PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRN
Sbjct: 758 KVETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRN 817
Query: 211 EGIDLTHNPEFTTCDF 258
E IDLTHNPEFTTC+F
Sbjct: 818 ESIDLTHNPEFTTCEF 833
Score = 111 bits (266), Expect = 6e-25
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPE----GKEIEIDFTPPFARVP 422
FYMAYADYNDLM ITE+++SGMV++I G YKV YHPE + GK +DFTPPF R+
Sbjct: 833 FYMAYADYNDLMEITETMISGMVKNITGGYKVTYHPEAVDADNLGKSWTVDFTPPFKRLR 892
Query: 423 MMATLERVLNVKLPAPDKLDTPEANDFL 506
M+ LE+VL V+LP+P +TPEAN L
Sbjct: 893 MIPELEKVLGVRLPSPQDFNTPEANKLL 920
Score = 60.1 bits (139), Expect = 2e-09
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 512 LCNTHQIECSPPRTTARLLDKLVSVFLEEECINPT 616
LC H+++C+PPRTTARLLDKLV FLE +C++PT
Sbjct: 923 LCVKHEVDCAPPRTTARLLDKLVGEFLESQCVSPT 957
>SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 125 bits (302), Expect = 3e-29
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 34 VETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNE 213
VETPLMN +PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRNE
Sbjct: 1 VETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRNE 60
>SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 258 YMAYADYNDLMTITESILSGMVQSIHGS-YKVKYHPEG 368
YMAYADY+DL+ +TES+ + Q + G+ Y+ + G
Sbjct: 100 YMAYADYHDLIELTESLFRTLAQEVLGTGYRARIRNHG 137
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 YMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDL-THNPEFTTCD 255
++ +P+LY +M + G D+VY IG FR E + H EF D
Sbjct: 252 FLAQSPQLYKQMALTGDFDKVYTIGSVFRAEDSNTHRHLTEFIGLD 297
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 339 SYKVKYHPEGPEGKEIEIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEAND 500
S +V +HP P+ +E+ F PP + + + ++ +++ DK D + ND
Sbjct: 365 SVEVTFHPSNPKCDSVEVHFHPPNPKCDSVEVMTKM--IRVIDDDKNDDDDYND 416
>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 273 DYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDF 398
DY D++ +T S ++ + +KYHP+ + E+ F
Sbjct: 4 DYYDILGLTRSATDADIKKEYRKLSLKYHPDKNQEPSAEVKF 45
>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
Length = 420
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 419 YSSKGWCEIDFYFLTLWSFWMIFDLVGSMNALYH 318
Y S+GW F L + W++FD++G + ++ H
Sbjct: 75 YHSEGW------FKLLHNVWLVFDILGGVGSILH 102
>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 576
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 273 DYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDF 398
DY ++ + + ++ VKYHP+ +GK+ E F
Sbjct: 26 DYYQILGVPRNASDKQIKKAFRKMAVKYHPDKNKGKDAEEKF 67
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 551 TTARLLDKLVSVFLEEECINPTLYWI 628
TTA L ++++++F EE I T+Y++
Sbjct: 179 TTAPLYNQILNLFAEENAIEDTIYYL 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,849,874
Number of Sequences: 59808
Number of extensions: 470175
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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