Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0580
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 167 4e-42
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 167 4e-42
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 167 4e-42
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical ... 39 0.004
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF063009-2|AAO21399.1| 438|Caenorhabditis elegans Innexin prote... 28 6.6
AF063009-1|AAM45360.1| 454|Caenorhabditis elegans Innexin prote... 28 6.6
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 28 6.6
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 28 6.6
AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 27 8.7
AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 27 8.7
AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 27 8.7
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 167 bits (407), Expect = 4e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
RR+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DR
Sbjct: 176 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 235
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYE+GR FRNEGIDLTHNPEFTTC+F
Sbjct: 236 VYEVGRLFRNEGIDLTHNPEFTTCEF 261
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPFARVPMMA 431
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF RV M
Sbjct: 261 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYD 320
Query: 432 TLERVLNVKLPAPDKLDTPEAND 500
L L LP P L T EA +
Sbjct: 321 GLAEKLGATLPDPSTLHTEEARE 343
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 512 LCNTHQIECSPPRTTARLLDKLVSVFLEEECINPT 616
LC + ++CS PRTTARLLDKLV +LE I+PT
Sbjct: 348 LCRDNNVDCSAPRTTARLLDKLVGEYLESTFISPT 382
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 167 bits (407), Expect = 4e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
RR+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DR
Sbjct: 258 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 317
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYE+GR FRNEGIDLTHNPEFTTC+F
Sbjct: 318 VYEVGRLFRNEGIDLTHNPEFTTCEF 343
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPFARVPMMA 431
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF RV M
Sbjct: 343 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYD 402
Query: 432 TLERVLNVKLPAPDKLDTPEAND 500
L L LP P L T EA +
Sbjct: 403 GLAEKLGATLPDPSTLHTEEARE 425
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 512 LCNTHQIECSPPRTTARLLDKLVSVFLEEECINPT 616
LC + ++CS PRTTARLLDKLV +LE I+PT
Sbjct: 430 LCRDNNVDCSAPRTTARLLDKLVGEYLESTFISPT 464
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 167 bits (407), Expect = 4e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
RR+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DR
Sbjct: 234 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 293
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYE+GR FRNEGIDLTHNPEFTTC+F
Sbjct: 294 VYEVGRLFRNEGIDLTHNPEFTTCEF 319
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPFARVPMMA 431
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF RV M
Sbjct: 319 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYD 378
Query: 432 TLERVLNVKLPAPDKLDTPEAND 500
L L LP P L T EA +
Sbjct: 379 GLAEKLGATLPDPSTLHTEEARE 401
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 512 LCNTHQIECSPPRTTARLLDKLVSVFLEEECINPT 616
LC + ++CS PRTTARLLDKLV +LE I+PT
Sbjct: 406 LCRDNNVDCSAPRTTARLLDKLVGEYLESTFISPT 440
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 RRFL-DNMGFLEVETP-LMNXVPGGATAKPFITHHNELNMDLYMRI--APELYHKMLVVG 168
RRFL + GF++VETP L PGGA F+ N L + +P+ + ++L+VG
Sbjct: 167 RRFLVEKSGFVDVETPTLFRRTPGGAAE--FVVPAPSPNQGLAYSLPQSPQQFKQLLMVG 224
Query: 169 GLDRVYEIGRQFRNEGIDLTHNPEFTTCD 255
+DR ++I R +R+EG PEFT D
Sbjct: 225 AIDRYFQIARCYRDEGSKGDRQPEFTQVD 253
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
R LD GF+E+ P + P A F + Y+ +P+LY +M + G ++
Sbjct: 237 RNILDVRGFVEIMAPKIISAPSEGGANVFEVSY--FKGSAYLAQSPQLYKQMAIAGDFEK 294
Query: 181 VYEIGRQFRNEGIDL-THNPEFTTCD----FTWHMRIIM 282
VY IG FR E + H EF D F +H +M
Sbjct: 295 VYTIGPVFRAEDSNTHRHMTEFVGLDLEMAFNFHYHEVM 333
>AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical
protein Y32F6A.6 protein.
Length = 261
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 261 MAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFARV 419
M + ND + E +++ +V SI S+ +KY + +EIDFTPPF R+
Sbjct: 174 MCNINLNDFQDLVEELITTLVYSIKRSFLIKY-------RSVEIDFTPPFKRL 219
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 4 RFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRV 183
++L + FLE +MN + A +N+D ELY++MLV G++RV
Sbjct: 102 KYLYQLLFLETNRVIMNPI-----ALESFNKRQSINIDYVYSKMTELYNRMLVTQGIERV 156
Query: 184 YEIGRQ 201
++ Q
Sbjct: 157 FKWNSQ 162
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -2
Query: 125 MYKSMFNSL**VMNGLAVAPPGTIFISGVSTSRK 24
M+K++F+SL + +G P T F SGVS+S++
Sbjct: 517 MFKTVFSSLDSLRSGATTILPETTFTSGVSSSQQ 550
>Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical
protein ZC482.4 protein.
Length = 550
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 46 LMNXVPGGATAKPFITHHNELNMDLYMRIAPELYH--KMLVVGGLDRVYEIGRQFRNEGI 219
++N V GG +H +L + P LY + +GG GR ++NE I
Sbjct: 425 VINLVTGGERIAIIQDNHPDLFKSRECDLFPYLYTFVNLTYIGG-----NCGRSYQNEDI 479
Query: 220 DLTHNPEFTTCDF 258
D+ + E+T +F
Sbjct: 480 DVYNGQEYTLVNF 492
>AF063009-2|AAO21399.1| 438|Caenorhabditis elegans Innexin protein
19, isoform b protein.
Length = 438
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 429 ATLERVLNVKLPAPDKLDTPEANDFLKTYATL-IRLSARHRG 551
AT+ER+ V AP LDT +DFLK+ L +R+ + H G
Sbjct: 343 ATVERLYTVIAFAPHLLDT-FVSDFLKSDGVLMLRMISNHAG 383
>AF063009-1|AAM45360.1| 454|Caenorhabditis elegans Innexin protein
19, isoform a protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 429 ATLERVLNVKLPAPDKLDTPEANDFLKTYATL-IRLSARHRG 551
AT+ER+ V AP LDT +DFLK+ L +R+ + H G
Sbjct: 359 ATVERLYTVIAFAPHLLDT-FVSDFLKSDGVLMLRMISNHAG 399
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 178 RVYEIGRQFRNEGIDLTHNPEF 243
+++ I R FRNE +D TH EF
Sbjct: 348 KLFSIDRVFRNETLDATHLAEF 369
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 178 RVYEIGRQFRNEGIDLTHNPEF 243
+++ I R FRNE +D TH EF
Sbjct: 404 KLFSIDRVFRNETLDATHLAEF 425
>AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 106 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 243
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
>AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 106 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 243
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
>AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial
phenylalanyl-tRNAsynthetase protein.
Length = 458
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 106 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 243
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,020
Number of Sequences: 27780
Number of extensions: 350636
Number of successful extensions: 836
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -