Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0580
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 158 3e-39
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f... 114 5e-26
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f... 57 9e-09
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as... 42 4e-04
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as... 31 0.50
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as... 31 0.50
At5g15710.1 68418.m01837 F-box family protein unusual floral org... 30 1.5
At4g13830.2 68417.m02143 DNAJ heat shock N-terminal domain-conta... 29 3.5
At4g13830.1 68417.m02142 DNAJ heat shock N-terminal domain-conta... 29 3.5
At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c... 28 4.7
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c... 28 4.7
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 158 bits (383), Expect = 3e-39
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
RRFLDN FLEVETP+MN + GGA A+PF+THHN+L+M LYMRIAPELY K L+VGGL+R
Sbjct: 291 RRFLDNKNFLEVETPMMNMIAGGAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLER 350
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYEIG+QFRNEGIDLTHNPEFTTC+F
Sbjct: 351 VYEIGKQFRNEGIDLTHNPEFTTCEF 376
Score = 95.5 bits (227), Expect = 3e-20
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFARVPMMAT 434
FYMA+ADYNDLM +TE +LSGMV+ + G YK+KY+ G + IEIDFTPPF R+ M+
Sbjct: 376 FYMAFADYNDLMEMTEVMLSGMVKELTGGYKIKYNANGYDKDPIEIDFTPPFRRIEMIGE 435
Query: 435 LERVLNVKLPAPDKLDTPEANDFL 506
LE+V KL P L + EAN +L
Sbjct: 436 LEKV--AKLNIPKDLASEEANKYL 457
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +2
Query: 515 CNTHQIECSPPRTTARLLDKLVSVFLEEECINPT 616
C ++C PP+TTARLLDKLV FLE C+NPT
Sbjct: 461 CARFDVKCPPPQTTARLLDKLVGEFLEPTCVNPT 494
>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
family protein similar to SP|Q9RHV9 Lysyl-tRNA
synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
stearothermophilus}; contains Pfam profile: PF00152 tRNA
synthetases class II (D, K and N)
Length = 602
Score = 114 bits (274), Expect = 5e-26
Identities = 49/85 (57%), Positives = 65/85 (76%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
R+ +++ G+LEVETP++ GGA A+PF+T HN L DLY+RIA EL+ K ++VGG ++
Sbjct: 263 RKTVESFGYLEVETPVLQGAAGGAEARPFVTFHNSLGRDLYLRIATELHLKRMLVGGFEK 322
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCD 255
VYEIGR FRNEGI HNPEFTT +
Sbjct: 323 VYEIGRIFRNEGISTRHNPEFTTIE 347
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 258 YMAYADYNDLMTITESILSGMVQSIHGSYKVKY 356
Y AY+DY+ +M + E I++ +++G + Y
Sbjct: 349 YEAYSDYHSMMDMAELIVTQCSMAVNGKLTIDY 381
>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
family protein similar to SP|P36419 Aspartyl-tRNA
synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
(AspRS) {Thermus thermophilus}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 664
Score = 57.2 bits (132), Expect = 9e-09
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 RRFL-DNMGFLEVETPLMNX-VPGGATAKPFITHHNELNMDLY-MRIAPELYHKMLVVGG 171
RR+L D GF+E+ETP+++ P GA + ++ + Y + +P+L+ +ML+V G
Sbjct: 230 RRYLEDRHGFIEIETPILSRSTPEGA--RDYLVPSRIQSGTFYALPQSPQLFKQMLMVSG 287
Query: 172 LDRVYEIGRQFRNEGIDLTHNPEFTTCD 255
D+ Y+I R FR+E + PEFT D
Sbjct: 288 FDKYYQIARCFRDEDLRADRQPEFTQLD 315
>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative simialr to
aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
synthetases class II (D, K and N)
Length = 532
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
R +L + GFLE+ TP + + G + + + + +P+L+ +M + G + R
Sbjct: 238 REYLQSKGFLEIHTPKL--IAGSSEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDMRR 295
Query: 181 VYEIGRQFRNE-GIDLTHNPEFTTCDFTWHMRI 276
V+E+G FR E H EF D +R+
Sbjct: 296 VFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRM 328
>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 133 APELYHKMLVVGGLDRVYEIGRQFRNE-GIDLTHNPEFTTCDFTWHMR 273
+P+L+ +M + G L RV+E+G FR E H EF D +R
Sbjct: 306 SPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIR 353
>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 133 APELYHKMLVVGGLDRVYEIGRQFRNE-GIDLTHNPEFTTCDFTWHMR 273
+P+L+ +M + G L RV+E+G FR E H EF D +R
Sbjct: 306 SPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIR 353
>At5g15710.1 68418.m01837 F-box family protein unusual floral organs
protein UFO - Arabidopsis thaliana, PIR:S57710
Length = 448
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 437 QCCHHRYSSKGWCEIDFYFLTLWSFWMI 354
QC K W +I F FL W+FW++
Sbjct: 169 QCSVFSLPLKTWYKIPFTFLPPWAFWLV 196
>At4g13830.2 68417.m02143 DNAJ heat shock N-terminal
domain-containing protein (J20) identical to DnaJ-like
protein [Arabidopsis thaliana] GI:6691127; similar to
SP|Q05646 Chaperone protein dnaJ Erysipelothrix
rhusiopathiae, J11 protein [Arabidopsis thaliana]
GI:9843641; contains Pfam profile PF00226 DnaJ domain
Length = 197
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 276 YNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFARV 419
+ DL+ +TES+ ++ + KYHP+ +E ++T F RV
Sbjct: 67 FYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVE-EYTDRFIRV 113
>At4g13830.1 68417.m02142 DNAJ heat shock N-terminal
domain-containing protein (J20) identical to DnaJ-like
protein [Arabidopsis thaliana] GI:6691127; similar to
SP|Q05646 Chaperone protein dnaJ Erysipelothrix
rhusiopathiae, J11 protein [Arabidopsis thaliana]
GI:9843641; contains Pfam profile PF00226 DnaJ domain
Length = 155
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 276 YNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFARV 419
+ DL+ +TES+ ++ + KYHP+ +E ++T F RV
Sbjct: 67 FYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVE-EYTDRFIRV 113
>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 491 FRCIKFIGCWEFHVK--NTFQCCHHRYSSKGWCEIDF 387
F C K +G F K +TF C HRY K C DF
Sbjct: 117 FSCNKKVGVMGFKCKCGSTF-CGSHRYPEKHECSFDF 152
>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 491 FRCIKFIGCWEFHVK--NTFQCCHHRYSSKGWCEIDF 387
F C K +G F K +TF C HRY K C DF
Sbjct: 117 FSCNKKVGVMGFKCKCGSTF-CGSHRYPEKHECSFDF 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,369,072
Number of Sequences: 28952
Number of extensions: 325833
Number of successful extensions: 844
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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