Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0514
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   1.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   1.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   1.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   8.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.3  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 51  KIMSDKRIESMLFDYGTTNRTDYRNGEIRPQSITV 155
           KI  +  I S + DY   N +  R  +  PQ   V
Sbjct: 30  KISDNSGINSQMIDYSRPNWSYLRTPQFEPQQFEV 64


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 51  KIMSDKRIESMLFDYGTTNRTDYRNGEIRPQSITV 155
           KI  +  I S + DY   N +  R  +  PQ   V
Sbjct: 50  KISDNSGINSQMIDYSRPNWSYLRTPQFEPQQFEV 84


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQPPYVSP 570
           AP P + L PT+  + +LQP  ++P
Sbjct: 59  APAPGHGLQPTMGDYTQLQPQRLAP 83


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 469 SCNFIFQCQAPLPDYQLLPTL 531
           SCN  +QCQ   P  Q  P +
Sbjct: 169 SCNRYWQCQGGYPRLQRCPAM 189


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 254 VHRPKQILGTDPRIVQQPCEKPKDTEREIA 343
           V+ P +I+G         C K   T +EIA
Sbjct: 193 VYEPVRIMGVHRPGFDNDCNKNTSTSKEIA 222


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 59  APAPGHGLQPTMGDYTQLQP 78


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 59  APAPGHGLQPTMGDYTQLQP 78


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 59  APAPGHGLQPTMGDYTQLQP 78


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +2

Query: 530 CSFGENCNLHTYL 568
           C +G NC +  Y+
Sbjct: 224 CKYGNNCEIDMYM 236


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 59  APAPGHGLQPTMGDYTQLQP 78


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 59  APAPGHGLQPTMGDYTQLQP 78


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 15  APAPGHGLQPTMGDYTQLQP 34


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 59  APAPGHGLQPTMGDYTQLQP 78


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 496 APLPDYQLLPTL*LWRKLQP 555
           AP P + L PT+  + +LQP
Sbjct: 59  APAPGHGLQPTMGDYTQLQP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,910
Number of Sequences: 336
Number of extensions: 2906
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)