Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0514
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    28   1.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   1.6  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    26   3.8  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    26   5.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.6  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    25   6.6  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   6.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.8  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 172 GEHHRSCVHLKTSTRFPIGRLKRYLSVCT*TEADIGHRS*DCSAAL 309
           GE  +     +   +FP+GR++R+L   T     +G +S   SAA+
Sbjct: 51  GERGQMSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAV 96


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 431  DMYTSDTSKGLREAVTSYFSVRLLYLITSCCQP 529
            D+Y+ D  K + + + SY  V ++YL   CC P
Sbjct: 2103 DVYSMDDVKAVEKILKSYPDVHVIYL---CCDP 2132


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 493 QAPLPDYQLLPTL*LWRKLQPPYV 564
           + P+P +++ P   +W KL PP V
Sbjct: 83  RVPIPPHRMTPLRNVWPKLYPPLV 106


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 231 AEAISFSLYIDRSRYWAPILGLFSSLAKNLKTQ 329
           A+ +  S+Y  +  YWA + G    + K   TQ
Sbjct: 44  AKGVKLSVYGAKKGYWAVVTGATDGIGKEYATQ 76


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 278  PISASVYVQTERYRFSLPIGKRVDVFKWT 192
            P     YV+  R   SL I KRVD+ +W+
Sbjct: 919  PEDTEFYVRRLRIPVSLNISKRVDLKQWS 947


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 528 GWQQLVIR*RSLTLKYEVTASLSPLLVSLVYMSLHNISLALGXSMSSILTAGVITM 361
           G QQ   +   L L       L PLLV + ++S     L+LG  + + + AG +TM
Sbjct: 141 GLQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTM 196


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 480 EVTASLSPLLVSLVYMSLHNISLALGXSMSSIL 382
           E++    P+L+ ++   + NIS+A+G  + +I+
Sbjct: 196 ELSGRKPPILIGMLGFGIFNISVAVGKDIQTIM 228


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 140  WPNFAISIVSTVCCAVIEEH 81
            W  FA+S  S VC A I EH
Sbjct: 976  WRLFAVSAHSNVCAARIYEH 995


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 437 YTSDTSKGLREAVTSYFSVRLLYLITSCCQPCSFGENCNLHTYLL 571
           Y S T K  +  V  + S+RL  L     +  SF E C  +   L
Sbjct: 31  YKSQTGKAPKCLVPYWLSIRLSLLYFKLTEAISFTEKCEKYNISL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,485
Number of Sequences: 5004
Number of extensions: 50610
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)