Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0514
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           31   0.73 
02_05_0263 - 27257150-27259213                                         29   2.2  
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644           27   9.0  
04_04_1345 + 32792879-32794207                                         27   9.0  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 308 CEKPKDTEREIAQRTRP--RIVMTPAVSMDDIXNPRARDILCND 433
           C+   D + E A  T P   +++T  V MDD+ N  A++ LC D
Sbjct: 250 CDISSDKQPEEANDTIPSKNLMITAGVCMDDVSNYSAKEGLCED 293


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 488 SVRLLYLITSCCQPCSFGENCNLHTYLL 571
           SV    +I++C + C FG   ++HTYL+
Sbjct: 234 SVTFANVISACVEVCYFGYAASIHTYLI 261


>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
          Length = 581

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 553 PPYVSPEWRWESVSWD 600
           PP   PEW+WE +  D
Sbjct: 211 PPLKIPEWKWEEIGMD 226


>04_04_1345 + 32792879-32794207
          Length = 442

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 245 FQFVHRPKQILGTDPRIVQQPCEKPKDT 328
           FQ++ RP+++LG   +++++ C    DT
Sbjct: 324 FQYLSRPQEVLGLFEKMLERGCRPRMDT 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,657,482
Number of Sequences: 37544
Number of extensions: 341724
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)