Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0514
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              28   7.0  
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                28   7.0  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 593 ETDSQRHSGDTYGGCSFRQSYRVGS 519
           +TDSQR  G T    SFR+  R GS
Sbjct: 136 QTDSQRSRGSTDSSSSFRRGGRYGS 160


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 443 SDTSKGLREAVTSYFSVRLLYLITSCCQPCSFGENCNLHT 562
           S+T +  +   T YFS+       S C PCS G  C+  T
Sbjct: 341 SNTGEACQPCTTGYFSLGG----ASSCTPCSIGHQCSNQT 376


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 593 ETDSQRHSGDTYGGCSFRQSYRVGS 519
           +TDSQR  G T    SFR+  R GS
Sbjct: 811 QTDSQRSRGSTDSSSSFRRGGRYGS 835


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -2

Query: 572 SGDTYGGCSFRQS---YRVGSSW*SGK-GA*H*NMKLQLPLVLCWCR*CTCRYIIYPWLL 405
           SG  YGG  + +    Y  GS+W S   G         LP ++ +   CT R+ IY W +
Sbjct: 815 SGGGYGGGGYNKRGGRYSGGSNWGSSPAGDDRVVGYCYLPNIIVFIVPCTVRFFIYNWFI 874


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 320 KDTEREIAQRT-RPRIVMTPAVSMDDIXNPRARDI 421
           ++ ER I QR  +P    TPA+S   + NP   D+
Sbjct: 167 EEVERPITQRLHQPLAFSTPALSQSGLGNPETPDV 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,282,598
Number of Sequences: 59808
Number of extensions: 387453
Number of successful extensions: 1053
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)