Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0514
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    29   3.5  
U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 296 VQQPCEKPKDTEREIAQRTRPRIVMTPAVSMDDIXNPRARDILCNDMYTSDTSK 457
           +Q+P   P   E        P +  TP  S+DD+    ARD L ++    D  K
Sbjct: 293 IQEPTTTPAPLEAPAPVENAPNLP-TPTFSVDDLMAQAARDALNSNSIVPDAPK 345


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 296 VQQPCEKPKDTEREIAQRTRPRIVMTPAVSMDDIXNPRARDILCNDMYTSDTSK 457
           +Q+P   P   E        P +  TP  S+DD+    ARD L ++    D  K
Sbjct: 293 IQEPTTTPAPLEAPAPVENAPNLP-TPTFSVDDLMAQAARDALNSNSIVPDAPK 345


>U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical
           protein ZK563.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 442 SVHVVT*YIPGSWIXNVVHTDCRGHHYAGSGPLSDFSFCVFRFFARLLNN 293
           SVHV+  +   + + NV   + + + Y G G L+D  F   R   ++L +
Sbjct: 22  SVHVIFRHGARAPVLNVTSEEAKSYFYRGLGQLTDEGFEQARLMGKVLRD 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,086,696
Number of Sequences: 27780
Number of extensions: 288724
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)